| Strain Overview | |
|---|---|
| Organism Name | Burkholderia agricolaris |
| Species | Burkholderia agricolaris |
| Strain | BaQS159 |
| Description/Title | |
| Annotated Genes | 7596 |
| Partial Genes | 78 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | USA: Virginia |
| Latitude/Longitude | 38.0342 N 78.5129 W |
| Environmental Feature (?) | forest |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | Suegene Noh |
| suegene.noh@gmail.com | |
| Institution | Washington University in St. Louis |
| Date Collected | 2008 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 2 |
| Contigs | |
| Contig N50 | 4816966 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN09651435 |
| NCBI Taxonomy ID | 2152888 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia agricolaris strain BaQS159, whole genome shotgun sequence | 4816966 bp | 61.8% |
Replicon details
|
| Burkholderia agricolaris strain BaQS159, whole genome shotgun sequence | 3904454 bp | 61.4% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |