Jan 25, 2011 |
BCAM2057
|
Burkholderia cenocepacia
J2315 |
New pathway: Type III secretion system (T3SS). New GO Accession: GO:0030254(IGC). New PubMed reference: 11557147. New PubMed reference: 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2057
|
Burkholderia cenocepacia
J2315 |
New pathway: Type III secretion system (T3SS). New GO accession: GO:0030254 [IGC]. New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2058
|
Burkholderia cenocepacia
J2315 |
New PubMed reference: 11557147. New PubMed reference: 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2058
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2059
|
Burkholderia cenocepacia
J2315 |
New PubMed reference: 11557147. New PubMed reference: 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2059
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2107
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 17371508.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2107
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 17371508.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2140
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New GO Accession: GO:0044010(IGC). New PubMed reference: 22950027.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2141
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New GO Accession: GO:0044010(IMP). New PubMed reference: 22950027.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2142
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New GO Accession: GO:0044010(IMP). New PubMed reference: 22950027.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2143
|
Burkholderia cenocepacia
J2315 |
New product name: BapA. New gene name: bapA. New product name confidence: Class 1. New synonym for gene: adhA. New synonym for CDS: AdhA. New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New GO Accession: GO:0044010(IMP). New PubMed reference: 23185499. New PubMed reference: 16313619. New PubMed reference: 22950027.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2143
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IMP]. New evidence reference (PMID): 16113259.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2143
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IMP). New PubMed reference: 16113259.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2165
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO Accession: GO:0008800(ISS). New PubMed reference: 19075063. New PubMed reference: 9371340. New PubMed reference: 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM2165
|
Burkholderia cenocepacia
J2315 |
New gene name: penB. New product name confidence: Class 1. New PMIDs: 26416862, 19075063.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2165
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 19075063. New evidence reference (PMID): 9371340. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM2166
|
Burkholderia cenocepacia
J2315 |
New gene name: penR. New PMID: 26416862.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2224
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2224
|
Burkholderia cenocepacia
J2315 |
New gene name: fptA. New product name confidence: Class 1. New PubMed ID: 15102796.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2224
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2225
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2225
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2226
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2226
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2227
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2227
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2228
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2228
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2230
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(ISS). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2230
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New GO accession: GO:0033212 [ISS]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2231
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2231
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2232
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2232
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2233
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2233
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2234
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2234
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2235
|
Burkholderia cenocepacia
J2315 |
New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2235
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2307
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0008237(IMP). New GO Accession: GO:0015628(IMP). New PubMed reference: 22848580. New PubMed reference: 16790782.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2307
|
Burkholderia cenocepacia
J2315 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 16790782 .
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM2307
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PMID): 16790782.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM2371
|
Burkholderia cenocepacia
J2315 |
New gene name: sigI. New product name: sigma factor 70 sigI. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 20, 2020 |
BCAM2418
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: Comparative DNA sequence analysis of BCAM2418 genes (structural and promoter regions) of various B. cenocepacia isolates revealed that their lengths greatly vary according to the number of repetitive elements (PMID:32097539). New PMIDs: 22919579, 32097539.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM2449
|
Burkholderia cenocepacia
J2315 |
New product name synonym: RND-10 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2549
|
Burkholderia cenocepacia
J2315 |
New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New PubMed reference: 8834871.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM2550
|
Burkholderia cenocepacia
J2315 |
New product name synonym: RND-10 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM2551
|
Burkholderia cenocepacia
J2315 |
New product name synonym: RND-10 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM2552
|
Burkholderia cenocepacia
J2315 |
New product name: LlpE. New product name confidence: Class 3. New PubMed reference: 15837391.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM2626
|
Burkholderia cenocepacia
J2315 |
New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 2. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon.Annotation transferred from: BGD:Bmul_3338.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2630
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: phuV. New product name confidence: Class 2. New PubMed ID: 17187664.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 14, 2010 |
BCAM2632
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM2738
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 23761261. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM2748
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Jan 25, 2011 |
BCAM2756
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2756
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 15175296.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2756
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2757
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2757
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 15175296.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2757
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2758
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IMP]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2758
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 12686638. New PubMed ID: 15175296.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2758
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IMP). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2759
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2759
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 12686638.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2759
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2760
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2760
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 12686638.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2760
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2761
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IMP]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 14638436. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2761
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 12686638. New PubMed ID: 17537663.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2761
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IMP). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 14638436. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2762
|
Burkholderia cenocepacia
J2315 |
New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM2762
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 12686638.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM2762
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAS0081
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAS0156
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 14982755. New PubMed reference: 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAS0156
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 14982755. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAS0167
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAS0201
|
Burkholderia cenocepacia
J2315 |
New product name: AfcF. New gene name: afcF. New product name confidence: Class 1. New GO Accession: GO:0071978(IMP). New GO Accession: GO:0044010(IMP). New GO Accession: GO:0006629(IMP). New PubMed reference: 23306671. New PubMed reference: 21690240.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAS0208
|
Burkholderia cenocepacia
J2315 |
New product name: AfcE. New gene name: afcE. New product name confidence: Class 1. New GO Accession: GO:0071978(IMP). New GO Accession: GO:0044010(IMP). New GO Accession: GO:0006629(IMP). New PubMed reference: 23306671. New PubMed reference: 21690240.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAS0208
|
Burkholderia cenocepacia
J2315 |
New PMID: 30513124.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAS0222
|
Burkholderia cenocepacia
J2315 |
New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 94% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
Jan 14, 2010 |
BCAS0223
|
Burkholderia cenocepacia
J2315 |
New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
Feb 4, 2013 |
BCAS0225
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:1900192(IMP). New PubMed reference: 20971902. New PubMed reference: 17967860.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 14, 2010 |
BCAS0225
|
Burkholderia cenocepacia
J2315 |
New gene name: shvR. New product name: shiny variant regulator, ShvR. New product name confidence: Class 1. New evidence reference (PMID): 19761612.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
Apr 20, 2020 |
BCAS0225
|
Burkholderia cenocepacia
J2315 |
New PMID: 30513124.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAS0236
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAS0293
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New comment : AidA is essential for slow killing of C. elegans but has little effect on fast killing. New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New PubMed reference: 15978077. New PubMed reference: 15557647. New PubMed reference: 19761612.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 29, 2010 |
BCAS0333
|
Burkholderia cenocepacia
J2315 |
New product name: putative siderophore receptor. New product name confidence: Class 3. Dropped gene name: orbA.
|
Pamela A. Sokol, University of Calgary
|
Apr 20, 2020 |
BCAS0335
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAS0355
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0009045(EXP). New GO Accession: GO:0042732(EXP). New PubMed reference: 23186665.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAS0364
|
Burkholderia cenocepacia
J2315 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
Feb 4, 2013 |
BCAS0409
|
Burkholderia cenocepacia
J2315 |
New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New GO Accession: GO:0008237(IMP). New GO Accession: GO:0015628(IMP). New PubMed reference: 22848580. New PubMed reference: 12904566. New PubMed reference: 2645209.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAS0591
|
Burkholderia cenocepacia
J2315 |
New product name: RND-1 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAS0592
|
Burkholderia cenocepacia
J2315 |
New product name: RND-1 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAS0593
|
Burkholderia cenocepacia
J2315 |
New product name: RND-1 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcen2424_0011
|
|
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 90% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|