Sep 15, 2008 |
Bcen_1152
|
|
New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New homology: 90% identity to ecfI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Aug 1, 2008 |
Bcen_1152
|
|
New alternate gene name: orbS. New alternate product name: putative RNA polymerase sigma factor, OrbS. New homology: 98% identity to OrbS[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
Sep 15, 2008 |
Bcen_1125
|
|
New gene name: ssuR. New product name: transcription factor SsuR. New product name confidence: Class 1. New homology: 99% identity to SsuR [B. cenocepacia J2315]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
Sep 15, 2008 |
Bcen_0877
|
|
New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 94% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen_0647
|
|
New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 25, 2008 |
Bcen_0501
|
|
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
Sep 15, 2008 |
Bcen_0408
|
|
New gene name: wbiI. New homology: 100% identity to wbiI[accession number AY523838]. New evidence reference (PMID): 15364998.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen_0330
|
|
New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen_0166
|
|
New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 100% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135.
|
Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
|
Sep 15, 2008 |
Bcen_0060
|
|
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 90% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen_0051
|
|
New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 86% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 25, 2008 |
Bcenmc03_6986
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 88% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
Aug 25, 2008 |
Bcenmc03_6985
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 95% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
Aug 25, 2008 |
Bcenmc03_6984
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnB. New product name confidence: Class 2. New homology: 83% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
Aug 25, 2008 |
Bcenmc03_6983
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 91% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
Sep 15, 2008 |
Bcenmc03_6493
|
Burkholderia cenocepacia
MC0-3 |
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Aug 25, 2008 |
Bcenmc03_6383
|
Burkholderia cenocepacia
MC0-3 |
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Sep 15, 2008 |
Bcenmc03_5824
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New homology: 81% identity to ecfH[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_5577
|
Burkholderia cenocepacia
MC0-3 |
New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcenmc03_5576
|
Burkholderia cenocepacia
MC0-3 |
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcenmc03_5574
|
Burkholderia cenocepacia
MC0-3 |
New gene name: cepI. New product name: autoinducer synthase CepI. New product name confidence: Class 1. New homology: 99% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Sep 15, 2008 |
Bcenmc03_5574
|
Burkholderia cenocepacia
MC0-3 |
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 89% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056.
|
Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
|
Sep 15, 2008 |
Bcenmc03_4628
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_4542
|
Burkholderia cenocepacia
MC0-3 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 94% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bcenmc03_4541
|
Burkholderia cenocepacia
MC0-3 |
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
Jan 25, 2011 |
Bcenmc03_4203
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4203
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4202
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4202
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4201
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4201
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4200
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4200
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4199
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4199
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4198
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4198
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4197
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4197
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4196
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4196
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4195
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4195
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4194
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4194
|
Burkholderia cenocepacia
MC0-3 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4192
|
Burkholderia cenocepacia
MC0-3 |
New product name confidence: Class 1. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IMP). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcenmc03_4192
|
Burkholderia cenocepacia
MC0-3 |
New product name confidence: Class 1. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IMP]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcenmc03_4148
|
Burkholderia cenocepacia
MC0-3 |
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcenmc03_3710
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 79% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_3702
|
Burkholderia cenocepacia
MC0-3 |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcenmc03_3641
|
Burkholderia cenocepacia
MC0-3 |
New homology: 89% idenity to sigE[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_3387
|
Burkholderia cenocepacia
MC0-3 |
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New homology: 82% idenity to sigJ[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_2826
|
Burkholderia cenocepacia
MC0-3 |
New gene name: sigM. New product name: sigma factor 70 SigM. New homology: 95% identity to SigM[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 25, 2008 |
Bcenmc03_2684
|
Burkholderia cenocepacia
MC0-3 |
New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323.
|
Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
|
Sep 15, 2008 |
Bcenmc03_2645
|
Burkholderia cenocepacia
MC0-3 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcenmc03_2642
|
Burkholderia cenocepacia
MC0-3 |
New gene name: coxG. New product name confidence: Class 2. New homology: 81% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcenmc03_2552
|
Burkholderia cenocepacia
MC0-3 |
New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcenmc03_2481
|
Burkholderia cenocepacia
MC0-3 |
New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 100% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
Sep 15, 2008 |
Bcenmc03_2388
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New homology: 93% identity to ecfE[B. cenocepacia L2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_2289
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 94% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_1844
|
Burkholderia cenocepacia
MC0-3 |
New homology: 85% identity to SigL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 1, 2008 |
Bcenmc03_1614
|
Burkholderia cenocepacia
MC0-3 |
New gene name: orbE. New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 99% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315].
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
Aug 1, 2008 |
Bcenmc03_1613
|
Burkholderia cenocepacia
MC0-3 |
New gene name: orbB. New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315].
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
Sep 15, 2008 |
Bcenmc03_1607
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New homology: 90% identity to ecfI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_1582
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ssuR. New product name: transcription factor SsuR. New product name confidence: Class 1. New homology: 99% identity to SsuR [B. cenocepacia J2315]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
Sep 15, 2008 |
Bcenmc03_1339
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 95% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_1085
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_0857
|
Burkholderia cenocepacia
MC0-3 |
New gene name: wbiI. New homology: 100% identity to wbiI[accession number AY523838].
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_0782
|
Burkholderia cenocepacia
MC0-3 |
New gene name: caiA. New product name confidence: Class 2. New homology: 96% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcenmc03_0616
|
Burkholderia cenocepacia
MC0-3 |
New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 100% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135.
|
Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
|
Sep 15, 2008 |
Bcenmc03_0301
|
Burkholderia cenocepacia
MC0-3 |
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcenmc03_0253
|
Burkholderia cenocepacia
MC0-3 |
New homology: 99% identity ot SigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_0240
|
Burkholderia cenocepacia
MC0-3 |
New homology: 88% idenity to EcfA2[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_0038
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 83% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcenmc03_0032
|
Burkholderia cenocepacia
MC0-3 |
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 89% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen2424_6002
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Aug 25, 2008 |
Bcen2424_5874
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Sep 15, 2008 |
Bcen2424_5695
|
|
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
Sep 15, 2008 |
Bcen2424_5694
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bcen2424_5600
|
|
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen2424_5129
|
|
New gene name: sigI. New product name: sigma factor 70 SigI. New product name confidence: Class 1. New homology: 81% identity to sigI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen2424_5066
|
|
New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 81% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
|
Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
Aug 1, 2008 |
Bcen2424_5003
|
|
New gene name: pchA. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis isochorismate synthase. New homology: 47% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
Aug 1, 2008 |
Bcen2424_5002
|
|
New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 73% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
Aug 1, 2008 |
Bcen2424_4993
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
Sep 15, 2008 |
Bcen2424_4726
|
|
New gene name: cepI. New product name: autoinducer synthase CepI. New product name confidence: Class 1. New homology: 98% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Sep 15, 2008 |
Bcen2424_4726
|
|
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 89% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056.
|
Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
|
Sep 15, 2008 |
Bcen2424_4724
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen2424_4723
|
|
New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen2424_4479
|
|
New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New homology: 81% identity to ecfH[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen2424_4132
|
|
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New homology: 83% idenity to sigJ[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen2424_3886
|
|
New gene name: sigE. New product name: sigma factor 70 SigE . New product name confidence: Class 1. New homology: 86% identity to sigE[ B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcen2424_3824
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 91% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcen2424_3822
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcen2424_3814
|
|
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 79% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 25, 2008 |
Bcen2424_3609
|
|
New gene name: tftC. New product name confidence: Class 2. New alternate product name: TftC. New homology: 42% identity to TftC [B. cepacia AC1100]. New evidence reference (PMID): 12700257.
|
Literature Review. Xun, L. Washington State University, Pullman, Washington
|
Sep 15, 2008 |
Bcen2424_3368
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Jan 25, 2011 |
Bcen2424_3323
|
|
New product name confidence: Class 1. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IMP). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen2424_3323
|
|
New product name confidence: Class 1. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IMP]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen2424_3321
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|