| Apr 10, 2015 |
Bcep1808_4210
|
Burkholderia vietnamiensis
G4 |
New gene name: bceK. New product name: BceK. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4209
|
Burkholderia vietnamiensis
G4 |
New gene name: bceJ. New product name: BceJ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4208
|
Burkholderia vietnamiensis
G4 |
New gene name: bceI. New product name: BceI. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4207
|
Burkholderia vietnamiensis
G4 |
New gene name: bceH. New product name: BceH. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4206
|
Burkholderia vietnamiensis
G4 |
New gene name: bceG. New product name: BceG. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bcep1808_4205
|
Burkholderia vietnamiensis
G4 |
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Apr 10, 2015 |
Bcep1808_4205
|
Burkholderia vietnamiensis
G4 |
New product name: BceF. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4204
|
Burkholderia vietnamiensis
G4 |
New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bcep1808_4203
|
Burkholderia vietnamiensis
G4 |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Apr 10, 2015 |
Bcep1808_4203
|
Burkholderia vietnamiensis
G4 |
New product name: BceD. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4202
|
Burkholderia vietnamiensis
G4 |
New gene name: bceC. New product name: BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4201
|
Burkholderia vietnamiensis
G4 |
New gene name: bceB. New product name: BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4200
|
Burkholderia vietnamiensis
G4 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bcep1808_4001
|
Burkholderia vietnamiensis
G4 |
New gene name: bviI. New product name: acyl-homoserine lactone synthase BviI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
| Sep 15, 2008 |
Bcep1808_2896
|
Burkholderia vietnamiensis
G4 |
New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Aug 25, 2008 |
Bcep1808_2766
|
Burkholderia vietnamiensis
G4 |
New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323.
|
Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
|
| Sep 15, 2008 |
Bcep1808_2731
|
Burkholderia vietnamiensis
G4 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
| Sep 15, 2008 |
Bcep1808_2728
|
Burkholderia vietnamiensis
G4 |
New gene name: coxG. New product name confidence: Class 2. New homology: 68% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
| Sep 15, 2008 |
Bcep1808_2605
|
Burkholderia vietnamiensis
G4 |
New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
| Sep 15, 2008 |
Bcep1808_2559
|
Burkholderia vietnamiensis
G4 |
New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 99% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
| Sep 15, 2008 |
Bcep1808_2350
|
Burkholderia vietnamiensis
G4 |
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 96% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcep1808_1046
|
Burkholderia vietnamiensis
G4 |
New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 89% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Aug 25, 2008 |
Bcep1808_0897
|
Burkholderia vietnamiensis
G4 |
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
| Sep 15, 2008 |
Bcep1808_0749
|
Burkholderia vietnamiensis
G4 |
New gene name: caiA. New product name confidence: Class 2. New homology: 94% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
| Sep 15, 2008 |
Bcep1808_0303
|
Burkholderia vietnamiensis
G4 |
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Sep 15, 2008 |
Bcep1808_0231
|
Burkholderia vietnamiensis
G4 |
New homology: 95% identity ot SigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_6259
|
|
New homology: 85% identity to sigL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_5637
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
| Sep 15, 2008 |
Bcen_5637
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
| Aug 25, 2008 |
Bcen_5510
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
| Sep 15, 2008 |
Bcen_5259
|
|
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_5165
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
| Sep 15, 2008 |
Bcen_5164
|
|
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
| Aug 25, 2008 |
Bcen_4906
|
|
New gene name: tftC. New product name confidence: Class 2. New alternate product name: TftC. New homology: 42% identity to TftC [B. cepacia AC1100]. New evidence reference (PMID): 12700257.
|
Literature Review. Xun, L. Washington State University, Pullman, Washington
|
| Sep 15, 2008 |
Bcen_4887
|
|
New gene name: pehA. New product name: pectic hydrolase enzyme A, PehA. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New homology: 84% identity to PehA [Burkholderia cepacia ATCC 25416]. New evidence reference (PMID): 17493828. New evidence reference (PMID): 17627609.
|
Literature review. Massa, C. Structural Biology Laboratory, Trieste, Italy
|
| Aug 1, 2008 |
Bcen_4887
|
|
New homology: 100% identity to PehA [Burkholderia cepacia ATCC 25416]. New evidence reference (PMID): 17493828. New evidence reference (PMID): 17627609.
|
Literature review. Massa, C. Structural Biology Laboratory, Trieste, Italy
|
| Jan 25, 2011 |
Bcen_4854
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4854
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4853
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4853
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4852
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4852
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4851
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4851
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4850
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4850
|
|
New comment : Contains frameshift mutation in J2315.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4850
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4849
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4849
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4848
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4848
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4847
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4847
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4846
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4846
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4845
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4845
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4843
|
|
New product name confidence: Class 1. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IMP). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bcen_4843
|
|
New product name confidence: Class 1. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IMP]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bcen_4800
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bcen_4549
|
|
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 79% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_4541
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Sep 15, 2008 |
Bcen_4539
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 91% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Sep 15, 2008 |
Bcen_4480
|
|
New gene name: sigE. New product name: sigma factor 70 SigE . New product name confidence: Class 1. New homology: 86% identity to sigE[ B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_4234
|
|
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New homology: 83% idenity to sigJ[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_3889
|
|
New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New homology: 81% identity to ecfH[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_3644
|
|
New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Sep 15, 2008 |
Bcen_3643
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
| Sep 15, 2008 |
Bcen_3641
|
|
New gene name: cepI. New product name: autoinducer synthase CepI. New product name confidence: Class 1. New homology: 98% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Sep 15, 2008 |
Bcen_3641
|
|
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 89% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056.
|
Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
|
| Aug 1, 2008 |
Bcen_3374
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_3365
|
|
New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 70% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen_3364
|
|
New gene name: pchA. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis isochorismate synthase. New homology: 47% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Sep 15, 2008 |
Bcen_3302
|
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New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 81% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
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Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
| Sep 15, 2008 |
Bcen_3239
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New gene name: sigI. New product name: sigma factor 70 SigI. New product name confidence: Class 1. New homology: 81% identity to sigI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_2849
|
|
New homology: 88% identity to EcfA2[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_2836
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New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New homology: 99% identity to sigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_2785
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|
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
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| Sep 15, 2008 |
Bcen_2201
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New gene name: sigM. New product name: sigma factor 70 SigM. New homology: 95% identity to SigM[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_2177
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|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Aug 25, 2008 |
Bcen_2044
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|
New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323.
|
Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
|
| Sep 15, 2008 |
Bcen_2006
|
|
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
| Sep 15, 2008 |
Bcen_2003
|
|
New gene name: coxG. New product name confidence: Class 2. New homology: 82% identity to CoxG[B. cenocepacia j2315]. New evidence reference (PMID): 17220310.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
| Sep 15, 2008 |
Bcen_1916
|
|
New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
| Sep 15, 2008 |
Bcen_1865
|
|
New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 100% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956.
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Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
| Sep 15, 2008 |
Bcen_1823
|
|
New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Sep 15, 2008 |
Bcen_1771
|
|
New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New homology: 91% identity to ecfE[B. cenocepacia L2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_1655
|
|
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 99% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Aug 1, 2008 |
Bcen_1165
|
|
New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 98.9% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1164
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 94% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1163
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1162
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 94% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1161
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1160
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 96% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1159
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 98% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1158
|
|
New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1156
|
|
New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1155
|
|
New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1154
|
|
New gene name: orbG. New product name: putative dioxygenase, OrbG. New product name confidence: Class 3. New homology: 99% identity to putative dioxygenase, OrbG[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1153
|
|
New product name confidence: Class 3. New alternate product name: OrbH. New homology: 100% identity to OrbH[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|