| Sep 15, 2008 |
BamMC406_3107
|
Burkholderia ambifaria
MC40-6 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
| Sep 15, 2008 |
Bcep18194_B0004
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
| Sep 15, 2008 |
Bamb_4966
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
| Sep 15, 2008 |
Bcenmc03_4542
|
Burkholderia cenocepacia
MC0-3 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 94% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
| Aug 1, 2008 |
Bcen2424_5003
|
|
New gene name: pchA. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis isochorismate synthase. New homology: 47% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_3364
|
|
New gene name: pchA. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis isochorismate synthase. New homology: 47% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_B0667
|
|
New gene name: pchA. New product name confidence: Class 2. New homology: 48% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_3365
|
|
New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 70% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_5002
|
|
New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 73% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_B0668
|
|
New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 73% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Sep 15, 2008 |
Bcen_4887
|
|
New gene name: pehA. New product name: pectic hydrolase enzyme A, PehA. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New homology: 84% identity to PehA [Burkholderia cepacia ATCC 25416]. New evidence reference (PMID): 17493828. New evidence reference (PMID): 17627609.
|
Literature review. Massa, C. Structural Biology Laboratory, Trieste, Italy
|
| Apr 20, 2020 |
Bmul_3689
|
Burkholderia multivorans
ATCC 17616 |
New gene name: penA. New product name: class A beta-lactamase, PenA. New product name confidence: Class 1. New comment: B. multivorans PenA is an inhibitor-resistant carbapenemase, whereas the B. pseudomallei PenA is an extended spectrum beta-lactamase (PMID:27620956). New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM2165
|
Burkholderia cenocepacia
J2315 |
New gene name: penB. New product name confidence: Class 1. New PMIDs: 26416862, 19075063.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM2166
|
Burkholderia cenocepacia
J2315 |
New gene name: penR. New PMID: 26416862.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2248
|
Burkholderia cenocepacia
J2315 |
New gene name: pobA. New product name: Group I Sfp-type phosphopantetheinyl transferase, PobA. New product name confidence: Class 1. New pathway: pyochelin and ornibactin biosynthesis. New GO accession: GO:0033212 [IMP]. New evidence reference (PMID): 20966087.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BTH_II0256
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: ppkA-6. New pathway: T6SS-6 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 6 (T6SS-6).
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Aug 25, 2008 |
Bamb_4726
|
|
New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 90% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcenmc03_6983
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 91% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcep18194_C6706
|
|
New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 94% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcenmc03_6984
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnB. New product name confidence: Class 2. New homology: 83% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bamb_4727
|
|
New gene name: prnB. New product name confidence: Class 2. New homology: 85% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcep18194_C6707
|
|
New gene name: prnB. New product name: PrnB. New product name confidence: Class 2. New homology: 90% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bamb_4728
|
|
New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 93% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcenmc03_6985
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 95% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcep18194_C6708
|
|
New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 97% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcenmc03_6986
|
Burkholderia cenocepacia
MC0-3 |
New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 88% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bamb_4729
|
|
New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 89% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Aug 25, 2008 |
Bcep18194_C6709
|
|
New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 92% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
|
Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
|
| Apr 30, 2018 |
BURCENK562V_RS34770
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwB. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34830
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwC. New gene name synonym: trwC. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:Q8PRK1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34755
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34840
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwD4. New product name: type IV secretion system-coupling protein ptwD4. New gene name synonym: trwB. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:P09130.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34780
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwE. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34665
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwF. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34640
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwG. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34645
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwH. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34775
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwK. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34785
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwL. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34680
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwN. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34700
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwU. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34760
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwV. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34705
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwW. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pvdA. New product name confidence: Class 1. New PubMed ID: 10456885.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 1, 2008 |
Bcep18194_A4791
|
|
New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 94.2% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1542
|
|
New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 94.6% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1645
|
|
New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 98.9% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1165
|
|
New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 98.9% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Apr 30, 2018 |
BURCENK562V_RS34695
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pwbC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1495
|
Burkholderia pseudomallei
K96243 |
New gene name: regA. New product name confidence: Class 2. New PubMed ID: 17660433.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1494
|
Burkholderia pseudomallei
K96243 |
New gene name: regB. New product name confidence: Class 2. New PubMed ID: 17660433.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bcen_5164
|
|
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
| Sep 15, 2008 |
Bcen2424_5695
|
|
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
| Sep 15, 2008 |
Bcenmc03_4541
|
Burkholderia cenocepacia
MC0-3 |
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
| Apr 22, 2009 |
BCAM0005
|
Burkholderia cenocepacia
J2315 |
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Sep 15, 2008 |
Bamb_4967
|
|
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
| Jan 25, 2011 |
BTH_II0131
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rhs-2. New product name: Rhs-2. New pathway: T6SS-2 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 2 (T6SS-2).
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BTH_II0267
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rhs-6. New pathway: T6SS-6 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 6 (T6SS-6).
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29055
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlA. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD::BTH_I1470.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I1470
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rmlA. New product name: glucose-1-phosphate thymidylyltransferase RmlA. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29050
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlB. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I1469
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rmlB. New product name: dTDP-d-glucose 4,6-dehydratase RmlB. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29060
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlC. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1471.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I1471
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rmlC. New product name: dTDP-6-deoxy-d-xylo-4-hexulose 3,5-epimerase RmlC. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlD. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I1472
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rmlD. New product name: dTDP-6-deoxy-l-lyxo-4-hexulose reductase RmlD. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS18935
|
Burkholderia cenocepacia
H111 |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 1. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment:
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS06240
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_5122
|
Burkholderia multivorans
ATCC 17616 |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS08380
|
Burkholderia dolosa
AU0158 |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS26405
|
Burkholderia ambifaria
AMMD |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCEP18194_RS35610
|
Burkholderia lata
383 |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpoE. New product name confidence: Class 1. New PubMed ID: 18227267.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bamb_2851
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Sep 15, 2008 |
Bcen_2177
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Sep 15, 2008 |
Bcen2424_2791
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Sep 15, 2008 |
Bcep18194_A6121
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
| Apr 10, 2015 |
BCAL1536
|
Burkholderia cenocepacia
J2315 |
New gene name: rpoN. New product name: alternative sigma factor RpoN. New product name confidence: Class 1. New PubMed ID: 15213146. New PubMed ID: 18195023.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpoN. New product name: alternative sigma factor RpoN. New product name confidence: Class 1. New PubMed ID: 15213146. New PubMed ID: 18195023.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS15645
|
Burkholderia cenocepacia
H111 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 1. New PubMed ID: 29363827. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0534
|
Burkholderia cenocepacia
J2315 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS04450
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_3052
|
Burkholderia multivorans
ATCC 17616 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS13280
|
Burkholderia dolosa
AU0158 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS15655
|
Burkholderia ambifaria
AMMD |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I0209
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS15640
|
Burkholderia cenocepacia
H111 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 1. New PubMed ID: 29363827. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0535
|
Burkholderia cenocepacia
J2315 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS04445
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_3051
|
Burkholderia multivorans
ATCC 17616 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS13285
|
Burkholderia dolosa
AU0158 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS15650
|
Burkholderia ambifaria
AMMD |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I0210
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I1403
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: scmR. New product name: secondary metabolite regulator, ScmR. New product name confidence: Class 1. New PubMed ID: 28320949. New comment:
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1602
|
Burkholderia mallei
ATCC 23344 |
New gene name: sctC. New product name: type III secretion system outer membrane ring protein / secretin SctC (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: .Annotation transferred from: BGD:BPSS1592.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1409
|
Burkholderia pseudomallei
K96243 |
New gene name: sctF. New product name: type III secretion system outer rod/major needle component SctF (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1623
|
Burkholderia mallei
ATCC 23344 |
New gene name: sctF. New product name: type III secretion system outer rod/major needle component SctF (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1612.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1612
|
Burkholderia pseudomallei
K96243 |
New gene name: sctF. New product name: type III secretion system outer rod/major needle component SctF (T3SS-2). New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1635
|
Burkholderia mallei
ATCC 23344 |
New gene name: sctK. New product name: type III secretion system inner membrane component SctK (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1625.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1636
|
Burkholderia mallei
ATCC 23344 |
New gene name: sctL. New product name: type III secretion system stator protein SctL (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1626.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1639
|
Burkholderia mallei
ATCC 23344 |
New gene name: sctT. New product name: type III secretion system inner membrane export apparatus protein SctT (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1629.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|