Log of Annotation Updates

2953 annotation updates returned Previous1..891011121314151617..30Next
Ordered by Description , ascending

Download options

Date Locus Tag Strain Description Submitter
Apr 30, 2018 BCAL3111 Burkholderia cenocepacia J2315 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2558 Burkholderia multivorans ATCC 17616 New gene name: ldhA. New product name: D-Lactate Dehydrogenase LdhA . New product name confidence: Class 1. New PubMed ID: 28733286. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2557 Burkholderia multivorans ATCC 17616 New gene name: ldhR. New product name: LdhR. New product name confidence: Class 1. New PubMed ID: 28733286. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21445 Burkholderia cenocepacia K56-2Valvano New gene name: lpxA. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A722. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21450 Burkholderia cenocepacia K56-2Valvano New gene name: lpxB. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P10441. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS00665 Burkholderia cenocepacia K56-2Valvano New gene name: lpxC. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A725. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21435 Burkholderia cenocepacia K56-2Valvano New gene name: lpxD. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P21645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2154 Burkholderia cenocepacia J2315 New gene name: lpxH. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P43341. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS17050 Burkholderia lata 383 New gene name: lpxH. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P43341. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2759 Burkholderia cenocepacia J2315 New gene name: lpxK. New product name: LpxK. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P27300. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS01875 Burkholderia cenocepacia K56-2Valvano New gene name: lpxK. New product name: LpxK. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P27300. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0508 Burkholderia cenocepacia J2315 New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS04580 Burkholderia cenocepacia K56-2Valvano New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0508. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2088 Burkholderia thailandensis E264 ATCC 700388 New gene name: malA. New product name: polyketide synthase MalA. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2090 Burkholderia thailandensis E264 ATCC 700388 New gene name: malC. New product name: MalC. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2091 Burkholderia thailandensis E264 ATCC 700388 New gene name: malD. New product name: MalD. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2092 Burkholderia thailandensis E264 ATCC 700388 New gene name: malE. New product name: MalE. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2093 Burkholderia thailandensis E264 ATCC 700388 New gene name: malF. New product name: polyketide synthase MalF. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2094 Burkholderia thailandensis E264 ATCC 700388 New gene name: malG. New product name: MalG. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2095 Burkholderia thailandensis E264 ATCC 700388 New gene name: malI. New product name: MalI. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster. New comment: Incorrect translation start site called at 2571743 during initial annotation. The site was changed to 2573204 based on alignment with B. pseudomallei K96243 BPSS0303. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2096 Burkholderia thailandensis E264 ATCC 700388 New gene name: malJ. New product name: MalJ. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2097 Burkholderia thailandensis E264 ATCC 700388 New gene name: malK. New product name: MalK. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2098 Burkholderia thailandensis E264 ATCC 700388 New gene name: malL. New product name: MalL. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2099 Burkholderia thailandensis E264 ATCC 700388 New gene name: malM. New product name: MalM. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2087 Burkholderia thailandensis E264 ATCC 700388 New gene name: malR. New product name: MalR. New gene name synonym: btaR4. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I2392 Burkholderia thailandensis E264 ATCC 700388 New gene name: mftP . New product name: major facilitator transport protein MftP. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 24955985. New PubMed ID: 20730247. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I2391 Burkholderia thailandensis E264 ATCC 700388 New gene name: mftR. New product name: major facilitator transport regulator MftR. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 24955985. New PubMed ID: 20730247. New PubMed ID: 29087175. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcep1808_5259 Burkholderia vietnamiensis G4 New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bamb_4115 New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_B1053 New gene name: mgtC. New homology: 92% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen_3644 New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen2424_4723 New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcenmc03_5577 Burkholderia cenocepacia MC0-3 New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Apr 22, 2009 BCAM1867 Burkholderia cenocepacia J2315 New gene name: mgtC. New product name confidence: Class 1. New evidence reference (PMID): 16988222. Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
Apr 10, 2015 BURCENK562V_RS1 Burkholderia cenocepacia K56-2Valvano New gene name: mgtC. New product name: MgtC. New product name confidence: Class 1. New PubMed ID: 16988222. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL1554 Burkholderia pseudomallei K96243 New gene name: mntH. New product name: MntH. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 14977526. New PubMed ID: 10844693. Annotation transferred from: UniProtKB:P0A769. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS27075 Burkholderia cenocepacia K56-2Valvano New gene name: msbA. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 8809774. New comment: .Annotation transferred from: UniProtKB:P60752. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 KS03_RS20605 Burkholderia glumae ATCC 33617 New gene name: ntpR. New product name: NtpR. New product name synonym: negative regulator of toxoflavin production LysR . New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS03475. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BGL_RS03475 Burkholderia glumae PG1 New gene name: ntpR. New product name: NtpR. New product name synonym: negative regulator of toxoflavin production LysR . New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS03475. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS10755 Burkholderia cenocepacia H111 New gene name: ntrC. New product name: NtrC. New PubMed ID: 28662146. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS1 Burkholderia cenocepacia K56-2Valvano New gene name: opcI. New product name confidence: Class 1. New PubMed ID: 14977960. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Aug 1, 2008 Bamb_1541 New gene name: orbA. New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcenmc03_1613 Burkholderia cenocepacia MC0-3 New gene name: orbB. New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcenmc03_1614 Burkholderia cenocepacia MC0-3 New gene name: orbE. New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 99% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bamb_1531 New gene name: orbG. New product name: putative dioxygenase, OrbG. New product name confidence: Class 3. New homology: 95% identity to putative dioxygenase, OrbG[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcen2424_1634 New gene name: orbG. New product name: putative dioxygenase, OrbG. New product name confidence: Class 3. New homology: 99% identity to putative dioxygenase, OrbG[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcen_1154 New gene name: orbG. New product name: putative dioxygenase, OrbG. New product name confidence: Class 3. New homology: 99% identity to putative dioxygenase, OrbG[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Apr 10, 2015 BTH_II0822 Burkholderia thailandensis E264 ATCC 700388 New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1551 Burkholderia pseudomallei K96243 New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A2183 Burkholderia pseudomallei 668 New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A059 Burkholderia pseudomallei 1710b New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A209 Burkholderia pseudomallei 1106a New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BTH_II0821 Burkholderia thailandensis E264 ATCC 700388 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1552 Burkholderia pseudomallei K96243 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A2184 Burkholderia pseudomallei 668 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A059 Burkholderia pseudomallei 1710b New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A209 Burkholderia pseudomallei 1106a New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10247_A0731 Burkholderia mallei NCTC 10247 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_2052 Burkholderia mallei NCTC 10229 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA1552 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1552 Burkholderia mallei ATCC 23344 New gene name: orgB. New product name: type III secretion system stator protein OrgB (T3SS-3). New gene name synonym: sctL. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1552. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: paaA. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS13910 Burkholderia cenocepacia K56-2 New gene name: paaA. New product name: PaaA. New product name confidence: Class 1. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: Putative monooxygenase subunit of ring 1,2-phenylacetyl-CoA epoxidase . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13905 Burkholderia cenocepacia K56-2 New gene name: paaB. New product name: PaaB. New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment: . Annotation transferred from: UniProtKB:P76078. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13900 Burkholderia cenocepacia K56-2 New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76079. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS05100 Burkholderia cenocepacia K56-2Valvano New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76079. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: paaE. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS13890 Burkholderia cenocepacia K56-2 New gene name: paaE. New product name: PaaE. New product name synonym: putative reductase subunit of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76081. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: paaF. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS11495 Burkholderia cenocepacia K56-2 New gene name: paaF. New product name: PaaF. New product name synonym: putative 2,3-dehydroadipyl-CoA hydratase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 20660314. New comment: . Annotation transferred from: UniProtKB:P76082. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11510 Burkholderia cenocepacia K56-2 New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P77467. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28550 Burkholderia cenocepacia K56-2Valvano New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P77467. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS04260 Burkholderia cenocepacia K56-2 New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P76083. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS11895 Burkholderia cenocepacia K56-2Valvano New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P76083. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11515 Burkholderia cenocepacia K56-2 New gene name: paaI. New product name: PaaI. New product name synonym: putative phenylacetatyl-CoA thioesterase. New product name confidence: Class 2. New PubMed ID: 16464851. New comment: . Annotation transferred from: UniProtKB:P76084. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11505 Burkholderia cenocepacia K56-2 New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P0C7L2. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28555 Burkholderia cenocepacia K56-2Valvano New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P0C7L2. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11520 Burkholderia cenocepacia K56-2 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28540 Burkholderia cenocepacia K56-2Valvano New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0404 Burkholderia cenocepacia J2315 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS04255 Burkholderia cenocepacia K56-2 New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS11890 Burkholderia cenocepacia K56-2Valvano New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAM1711 Burkholderia cenocepacia J2315 New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: paaZ. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS11500 Burkholderia cenocepacia K56-2 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28560 Burkholderia cenocepacia K56-2Valvano New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0408 Burkholderia cenocepacia J2315 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BP1026B_I0260 Burkholderia pseudomallei 1026b New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BPSL3041 Burkholderia pseudomallei K96243 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 I35_RS02045 Burkholderia cenocepacia H111 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BMAA0543 Burkholderia mallei ATCC 23344 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BCEP18194_RS08230 Burkholderia lata 383 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BTH_I2900 Burkholderia thailandensis E264 ATCC 700388 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 bglu_1g04490 Burkholderia glumae BGR1 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 AK34_RS25965 Burkholderia dolosa AU0158 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.. Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BCAL0788 Burkholderia cenocepacia J2315 New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS03200 Burkholderia cenocepacia K56-2Valvano New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0788. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcen_5165 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bcen2424_5694 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Apr 22, 2009 BCAM0004 Burkholderia cenocepacia J2315 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. cencoepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Raymond C. Lo, Simon Fraser University
2953 annotation updates returned Previous1..891011121314151617..30Next