| Apr 10, 2015 |
BPSL3189
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS29090
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxE. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28755
|
Burkholderia ambifaria
AMMD |
New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS06245
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: dfsA. New product name: diffusible factor synthase A. New gene name synonym: rpfF. New product name confidence: Class 2. New PubMed ID: 18049456. New PubMed ID: 23231487. New PubMed ID: 25681189. New PubMed ID: 26725701. New PubMed ID: 22221091. New comment: .Annotation transferred from: BGD:BCAM0581.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0267
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Rhs-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAS0592
|
Burkholderia cenocepacia
J2315 |
New product name: RND-1 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0750
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1535.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0408
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3190
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbiI. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1935
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM1857
|
Burkholderia cenocepacia
J2315 |
New gene name: tecA. New product name: type VI secretion system effector protein TecA. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 27133449. New PubMed ID: 27133449. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1514
|
Burkholderia pseudomallei
K96243 |
New gene name: bopB. New product name: putative type III secretion system effector BopB. New product name confidence: Class 2. New PubMed ID: 24809950. New PubMed ID: 15289563. New PubMed ID: 25085508. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAS0593
|
Burkholderia cenocepacia
J2315 |
New product name: RND-1 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2070
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1535.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0442
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3197
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbiH. New product name confidence: Class 2. New PubMed ID: 24841205.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1934
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS25090
|
Burkholderia cenocepacia
H111 |
New gene name: tecA. New product name: type VI secretion system effector protein TecA. New product name confidence: Class 2. New subcellular localization: Extracellular (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization cross-ref: BGD:BCAM1857. New subcellular localization PMID: 27133449. New PubMed ID: 27133449. New comment: .Annotation transferred from: BGD:BCAM1857.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1385
|
Burkholderia pseudomallei
K96243 |
New gene name: chbP. New product name: Cif homolog in Burkholderia pseudomallei (CHBP). New gene name synonym: cif. New product name synonym: cell cycle inhibiting factor Cif. New product name confidence: Class 1. New subcellular localization: Host Associated (Class 1). New subcellular localization evidence code (ECO): ECO:0005600. New subcellular localization PMID: 24809950. New PubMed ID: 24809950. New PubMed ID: 19225106. New PubMed ID: 20688984. New PubMed ID: 28166272. New comment: CHBP contains a conserved catalytic triad (C156, H211, and Q231) that is important for cell cycle inhibition by deamindating Gln40 in ubiquitin (PMID: 20688984).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL1674
|
Burkholderia cenocepacia
J2315 |
New product name: RND-3 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1534
|
|
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1535.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0443
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3200
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL3240
|
Burkholderia cenocepacia
J2315 |
New product name: capsule polysaccharide export ATP-binding protein, CpxA. New gene name synonym: cpxA. New product name confidence: Class 2. New PubMed ID: 15213146. Annotation transferred from: Refseq:NP_283042.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1933
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS12625
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tecA. New product name: type VI secretion system effector protein TecA. New product name confidence: Class 2. New subcellular localization: Extracellular (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization cross-ref: BGD:BCAM1857. New subcellular localization PMID: 27133449. New PubMed ID: 27133449. New comment: .Annotation transferred from: BGD:BCAM1857.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1516
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system effector BopC (T3SS-3). New PubMed ID: 25635268. New PubMed ID: 22092682. New PubMed ID: 21670170. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. bopC is also necessary for T6SS-1 function in macrophages (PMID: 21670170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL1675
|
Burkholderia cenocepacia
J2315 |
New product name: RND-3 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BTH_II0837
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bsaX. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0446
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3201
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL1105
|
Burkholderia pseudomallei
K96243 |
New gene name: bspR. New product name: bsa-specific regulator, BspR. New product name confidence: Class 1. New PubMed ID: 20345664.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1932
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0337
|
Burkholderia cenocepacia
J2315 |
New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1517
|
Burkholderia pseudomallei
K96243 |
New product name: putative type III secretion system chaperone protein (T3SS-3). New PubMed ID: 22092682. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL1676
|
Burkholderia cenocepacia
J2315 |
New product name: RND-3 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1536
|
Burkholderia pseudomallei
K96243 |
New product name confidence: Class 1. New PubMed ID: 20951592.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0453
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3202
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1931
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0338
|
Burkholderia cenocepacia
J2315 |
New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1518
|
Burkholderia pseudomallei
K96243 |
New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL2822
|
Burkholderia cenocepacia
J2315 |
New product name: RND-4 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-4 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-4; Major RND-4 substrates are aztreonam, chloramphenicol, fluoroquinolones, tobramycin. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS668_A2166
|
Burkholderia pseudomallei
668 |
New gene name: bsaX. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0466
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3203
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpoE. New product name confidence: Class 1. New PubMed ID: 18227267.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1930
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqF. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New PubMed ID: 22320268. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0339
|
Burkholderia cenocepacia
J2315 |
New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1519
|
Burkholderia pseudomallei
K96243 |
New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL2821
|
Burkholderia cenocepacia
J2315 |
New product name: RND-4 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-4 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-4; Major RND-4 substrates are aztreonam, chloramphenicol, fluoroquinolones, tobramycin. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1710b_A057
|
Burkholderia pseudomallei
1710b |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0500
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3207
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS0
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 1. New subcellular localization: Periplasmic (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 17220310 .New PubMed ID: 17220310.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1929
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0340
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1520
|
Burkholderia pseudomallei
K96243 |
New product name: regulator of type VI secretion system-1 BprC . New PubMed ID: 20345664. New PubMed ID: 21670170. New PubMed ID: 25111708. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. In a bprC mutant, the expression of virA and virG was downregulated to 30% and 42%, respectively, whereas tssA expression was decreased to 4% of wild-type level (PMID:20345664).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL2820
|
Burkholderia cenocepacia
J2315 |
New product name: RND-4 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-4 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-4; Major RND-4 substrates are aztreonam, chloramphenicol, fluoroquinolones, tobramycin. New PMIDs: 19761586, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1106A_A207
|
Burkholderia pseudomallei
1106a |
New gene name: bsaX. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0502
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3208
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL2829
|
Burkholderia cenocepacia
J2315 |
New product name: HtrA protease.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BP1026B_II0535
|
Burkholderia pseudomallei
1026b |
New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0341
|
Burkholderia cenocepacia
J2315 |
New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1521
|
Burkholderia pseudomallei
K96243 |
New product name: regulator and type III secretion system effector protein BbrD (T3SS-3). New PubMed ID: 25111708. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM2551
|
Burkholderia cenocepacia
J2315 |
New product name synonym: RND-10 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0749
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0513
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3209
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1536
|
Burkholderia cenocepacia
J2315 |
New gene name: rpoN. New product name: alternative sigma factor RpoN. New product name confidence: Class 1. New PubMed ID: 15213146. New PubMed ID: 18195023.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BP1026B_II0536
|
Burkholderia pseudomallei
1026b |
New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0342
|
Burkholderia cenocepacia
J2315 |
New gene name: tssC. New product name: type VI secretion system protein TssC. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1522
|
Burkholderia pseudomallei
K96243 |
New PubMed ID: 25616255. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM2550
|
Burkholderia cenocepacia
J2315 |
New product name synonym: RND-10 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2069
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0524
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3210
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpoN. New product name: alternative sigma factor RpoN. New product name confidence: Class 1. New PubMed ID: 15213146. New PubMed ID: 18195023.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BP1026B_II0537
|
Burkholderia pseudomallei
1026b |
New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0343
|
Burkholderia cenocepacia
J2315 |
New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1523
|
Burkholderia pseudomallei
K96243 |
New PubMed ID: 28664152. New PubMed ID: 9642193. New PubMed ID: 16164564. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM2449
|
Burkholderia cenocepacia
J2315 |
New product name synonym: RND-10 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1535
|
|
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0535
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3211
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: cepR. New product name: N-acylhomoserine lactone dependent regulatory protein CepR. New product name confidence: Class 1. New PubMed ID: 14663096.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BP1026B_II0538
|
Burkholderia pseudomallei
1026b |
New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0344
|
Burkholderia cenocepacia
J2315 |
New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1524
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system effector protein BopA (T3SS-3). New PubMed ID: 18483470. New PubMed ID: 28664150. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM0925
|
Burkholderia cenocepacia
J2315 |
New product name: RND-8 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BTH_II0835
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bsaV. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1538.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0539
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3213
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: CepI. New PubMed ID: 14663096.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BP1026B_II0539
|
Burkholderia pseudomallei
1026b |
New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0345
|
Burkholderia cenocepacia
J2315 |
New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1525
|
Burkholderia pseudomallei
K96243 |
New product name: guanine nucleotide exchange factor BopE (T3SS-3). New PubMed ID: 18052936. New PubMed ID: 18654761. New PubMed ID: 24626296. New PubMed ID: 17041850. New PubMed ID: 25635268. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|