Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BPSS1502 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssH-5. New gene name synonym: clpV-5. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1501 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssG-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1500 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssF-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1499 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssE-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1498 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssD-5. New gene name synonym: hcp1. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 21300775. New PubMed ID: 17660433. New PubMed ID: 21300775. New PubMed ID: 24595140. New PubMed ID: 21670170. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1497 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssC-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1496 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssB-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1495 Burkholderia pseudomallei K96243 New gene name: virA. New product name: two-component regulatory system, sensor kinase VirA. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 21300775. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 21670170. New PubMed ID: 26094804. New PubMed ID: 26159714. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1494 Burkholderia pseudomallei K96243 New gene name: virG. New product name: two-component regulatory system, response regulator VirG. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 21670170. New PubMed ID: 21300775. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1493 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssA-5. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS17890 Burkholderia cenocepacia H111 New gene name: atsR. New product name: hybrid two-component system kinase-response regulator protein AtsR. New product name confidence: Class 1. New PubMed ID: 22830644. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28290 Burkholderia cenocepacia K56-2Valvano New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28285 Burkholderia cenocepacia K56-2Valvano New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28280 Burkholderia cenocepacia K56-2Valvano New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28275 Burkholderia cenocepacia K56-2Valvano New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28270 Burkholderia cenocepacia K56-2Valvano New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28265 Burkholderia cenocepacia K56-2Valvano New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28260 Burkholderia cenocepacia K56-2Valvano New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28255 Burkholderia cenocepacia K56-2Valvano New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28250 Burkholderia cenocepacia K56-2Valvano New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28245 Burkholderia cenocepacia K56-2Valvano New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28240 Burkholderia cenocepacia K56-2Valvano New gene name: tssC. New product name: type VI secretion system protein TssC. New gene name synonym: bcsK. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28235 Burkholderia cenocepacia K56-2Valvano New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28230 Burkholderia cenocepacia K56-2Valvano New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28225 Burkholderia cenocepacia K56-2Valvano New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28220 Burkholderia cenocepacia K56-2Valvano New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28215 Burkholderia cenocepacia K56-2Valvano New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01775 Burkholderia cenocepacia H111 New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01770 Burkholderia cenocepacia H111 New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01765 Burkholderia cenocepacia H111 New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01760 Burkholderia cenocepacia H111 New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01755 Burkholderia cenocepacia H111 New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01750 Burkholderia cenocepacia H111 New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01745 Burkholderia cenocepacia H111 New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01740 Burkholderia cenocepacia H111 New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01735 Burkholderia cenocepacia H111 New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01730 Burkholderia cenocepacia H111 New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01725 Burkholderia cenocepacia H111 New gene name: tssC. New product name: type VI secretion system protein TssC. New gene name synonym: bcsK. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01720 Burkholderia cenocepacia H111 New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01715 Burkholderia cenocepacia H111 New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01710 Burkholderia cenocepacia H111 New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01705 Burkholderia cenocepacia H111 New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01700 Burkholderia cenocepacia H111 New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0352 Burkholderia cenocepacia J2315 New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0351 Burkholderia cenocepacia J2315 New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0350 Burkholderia cenocepacia J2315 New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0349 Burkholderia cenocepacia J2315 New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0348 Burkholderia cenocepacia J2315 New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0347 Burkholderia cenocepacia J2315 New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0346 Burkholderia cenocepacia J2315 New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0345 Burkholderia cenocepacia J2315 New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0344 Burkholderia cenocepacia J2315 New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0343 Burkholderia cenocepacia J2315 New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0342 Burkholderia cenocepacia J2315 New gene name: tssC. New product name: type VI secretion system protein TssC. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0341 Burkholderia cenocepacia J2315 New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0340 Burkholderia cenocepacia J2315 New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0339 Burkholderia cenocepacia J2315 New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0338 Burkholderia cenocepacia J2315 New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0337 Burkholderia cenocepacia J2315 New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS12625 Burkholderia cenocepacia K56-2Valvano New gene name: tecA. New product name: type VI secretion system effector protein TecA. New product name confidence: Class 2. New subcellular localization: Extracellular (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization cross-ref: BGD:BCAM1857. New subcellular localization PMID: 27133449. New PubMed ID: 27133449. New comment: .Annotation transferred from: BGD:BCAM1857. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS25090 Burkholderia cenocepacia H111 New gene name: tecA. New product name: type VI secretion system effector protein TecA. New product name confidence: Class 2. New subcellular localization: Extracellular (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization cross-ref: BGD:BCAM1857. New subcellular localization PMID: 27133449. New PubMed ID: 27133449. New comment: .Annotation transferred from: BGD:BCAM1857. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1857 Burkholderia cenocepacia J2315 New gene name: tecA. New product name: type VI secretion system effector protein TecA. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 27133449. New PubMed ID: 27133449. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS06245 Burkholderia cenocepacia K56-2Valvano New gene name: dfsA. New product name: diffusible factor synthase A. New gene name synonym: rpfF. New product name confidence: Class 2. New PubMed ID: 18049456. New PubMed ID: 23231487. New PubMed ID: 25681189. New PubMed ID: 26725701. New PubMed ID: 22221091. New comment: .Annotation transferred from: BGD:BCAM0581. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS18940 Burkholderia cenocepacia H111 New gene name: dfsA. New product name: diffusible factor synthase A. New gene name synonym: rpfF. New product name confidence: Class 2. New PubMed ID: 18049456. New PubMed ID: 23231487. New PubMed ID: 25681189. New PubMed ID: 26725701. New PubMed ID: 22221091. New comment: .Annotation transferred from: BGD:BCAM0581. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0581 Burkholderia cenocepacia J2315 New gene name synonym: rpfF. New PubMed ID: 18049456. New PubMed ID: 23231487. New PubMed ID: 25681189. New PubMed ID: 26725701. New PubMed ID: 22221091. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS35610 Burkholderia lata 383 New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS26405 Burkholderia ambifaria AMMD New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS08380 Burkholderia dolosa AU0158 New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_5122 Burkholderia multivorans ATCC 17616 New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS06240 Burkholderia cenocepacia K56-2Valvano New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS18935 Burkholderia cenocepacia H111 New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 1. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I0209 Burkholderia thailandensis E264; ATCC 700388 New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS15655 Burkholderia ambifaria AMMD New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS13280 Burkholderia dolosa AU0158 New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3052 Burkholderia multivorans ATCC 17616 New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS04450 Burkholderia cenocepacia K56-2Valvano New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS15645 Burkholderia cenocepacia H111 New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 1. New PubMed ID: 29363827. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0534 Burkholderia cenocepacia J2315 New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I0210 Burkholderia thailandensis E264; ATCC 700388 New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS15650 Burkholderia ambifaria AMMD New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS13285 Burkholderia dolosa AU0158 New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3051 Burkholderia multivorans ATCC 17616 New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS04445 Burkholderia cenocepacia K56-2Valvano New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS15640 Burkholderia cenocepacia H111 New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 1. New PubMed ID: 29363827. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0535 Burkholderia cenocepacia J2315 New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS33285 Burkholderia lata 383 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS08385 Burkholderia cenocepacia K56-2Valvano New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS21130 Burkholderia cenocepacia H111 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS16980 Burkholderia ambifaria AMMD New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4604 Burkholderia multivorans ATCC 17616 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0700 Burkholderia thailandensis E264; ATCC 700388 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1681 Burkholderia pseudomallei K96243 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS06430 Burkholderia dolosa AU0158 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1011 Burkholderia cenocepacia J2315 New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS33290 Burkholderia lata 383 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS08380 Burkholderia cenocepacia K56-2Valvano New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS21125 Burkholderia cenocepacia H111 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS16975 Burkholderia ambifaria AMMD New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4605 Burkholderia multivorans ATCC 17616 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 bglu_2g08580 Burkholderia glumae BGR1 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that there is no gene annotated for bceU in B. glumae BGR1.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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