| Apr 10, 2015 |
BMA10247_A0765
|
Burkholderia mallei
NCTC 10247 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2084
|
Burkholderia mallei
NCTC 10229 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1520
|
|
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1523
|
Burkholderia pseudomallei
K96243 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1541
|
Burkholderia mallei
ATCC 23344 |
New product name: chaperone protein BsaR (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16164564. New PubMed ID: 14645290. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1542.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1542
|
Burkholderia pseudomallei
K96243 |
New product name: chaperone protein BsaR (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16164564. New PubMed ID: 14645290. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. BsaR is homologous to the Salmonella chaperone InvB which has been shown to be required for secretion of the effector proteins SopE and SopA (PMID:14645290). BsaR has been predicted to be the chaperone for BopE using a computational screen for chaperones in B. pseudomallei K96243 (PMID:16164564) but this has not been validated yet.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAL2021
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAL0274
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAM2632
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM0224
|
Burkholderia cenocepacia
J2315 |
New product name: collagen type 1-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: BCAM0224 is a trimeric autotransporter adhesin required for cell adhesion and virulence (PMID:20019083). New PMIDs: 22919579, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1512
|
Burkholderia pseudomallei
K96243 |
New product name: deubiquitinase TssM. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 24866793. New PubMed ID: 19168747. New PubMed ID: 24866793. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2409
|
Burkholderia cenocepacia
J2315 |
New product name: DnaE. New pathway: Lipopolysaccharide biosynthesis. New pathway: lipopolysaccharide core region biosynthesis. New GO accession: GO:0009244 [IGC]. New evidence reference (PMID): 19525227.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I1476
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: dTDP-Rha 4-epimerase. New PubMed ID: 21640586.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 1, 2008 |
Bcen2424_4993
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_3374
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_B0677
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Jan 14, 2010 |
Bxe_A2876
|
Burkholderia xenovorans
LB400 |
New product name: Fe2+-dependent oxygenase. New product name confidence: Class 2. New evidence reference (PMID): 19754880.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAL3378
|
Burkholderia cenocepacia
J2315 |
New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New evidence reference (PMID): 18057135.
|
Literature review. Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta.
|
| Apr 30, 2018 |
BMAA1523
|
Burkholderia mallei
ATCC 23344 |
New product name: guanine nucleotide exchange factor BopE (T3SS-3). New product name confidence: Class 2. New PubMed ID: 18052936. New PubMed ID: 18654761. New PubMed ID: 24626296. New PubMed ID: 17041850. New PubMed ID: 25635268. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1525.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1525
|
Burkholderia pseudomallei
K96243 |
New product name: guanine nucleotide exchange factor BopE (T3SS-3). New PubMed ID: 18052936. New PubMed ID: 18654761. New PubMed ID: 24626296. New PubMed ID: 17041850. New PubMed ID: 25635268. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3112
|
Burkholderia cenocepacia
J2315 |
New product name: heptosyltransferase I WaaC. New PubMed ID: 19525227. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0967
|
Burkholderia cenocepacia
J2315 |
New product name: heptosyltransferase II WaaF. New PubMed ID: 19525227. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL2829
|
Burkholderia cenocepacia
J2315 |
New product name: HtrA protease.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1699
|
Burkholderia cenocepacia
J2315 |
New product name: L-ornithine 5-monooxygenase.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 29, 2010 |
BCAL1699
|
Burkholderia cenocepacia
J2315 |
New product name: L-ornithine N(5)-oxygenase. New product name confidence: Class 1. New evidence reference (PMID): 10456885.
|
Pamela A. Sokol, University of Calgary
|
| Aug 1, 2008 |
Bcen2424_1643
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1163
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1540
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4789
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Apr 10, 2015 |
BCAM1867
|
Burkholderia cenocepacia
J2315 |
New product name: MgtC.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2408
|
Burkholderia cenocepacia
J2315 |
New product name: MsbA. New pathway: Lipopolysaccharide biosynthesis. New pathway: lipopolysaccharide core region biosynthesis. New GO accession: GO:0009244 [IGC]. New evidence reference (PMID): 19525227.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1538
|
Burkholderia mallei
ATCC 23344 |
New product name: needle length control protein BsaU (T3SS-3). New gene name synonym: sctP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 10944190. New PubMed ID: 16714590. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1539.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1539
|
Burkholderia pseudomallei
K96243 |
New product name: needle length control protein BsaU (T3SS-3). New gene name synonym: sctP. New PubMed ID: 28664152. New PubMed ID: 10944190. New PubMed ID: 16714590. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. BsaU is homologous to InvJ from Salmonella which is the molecular ruler which determines the length of the T3SS needle. (PMID: 10944190).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
Bth_I1158
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Nucleoside kinase. New product name confidence: Class 2. New evidence reference (PMID): 19021762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 1, 2008 |
Bamb_1536
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4785
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 97% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1639
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 98% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1159
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 98% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1537
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 91% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4786
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 93% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1640
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 96% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1160
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 96% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1538
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 91% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4787
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 92% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1641
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1161
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1539
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 86% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4788
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 90% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1642
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 94% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1162
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 94% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4790
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 91% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1644
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 94% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1164
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 94% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Apr 10, 2015 |
BMA10247_A0732
|
Burkholderia mallei
NCTC 10247 |
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2053
|
Burkholderia mallei
NCTC 10229 |
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1551
|
|
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAM0857
|
Burkholderia cenocepacia
J2315 |
New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 10, 2015 |
BCAM0267
|
Burkholderia cenocepacia
J2315 |
New product name: porin. New product name confidence: Class 1. New PubMed ID: 14977960.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3125
|
|
New product name: pseudogene (WbxB). New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
WQ49_RS09445
|
Burkholderia cenocepacia
K56-2 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS32320
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAS0364
|
Burkholderia cenocepacia
J2315 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
AK34_RS09175
|
Burkholderia dolosa
AU0158 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 22, 2009 |
BCAS0222
|
Burkholderia cenocepacia
J2315 |
New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 94% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
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Literature review. Schell, M. A. University of Georgia, Athens, Georgia
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| Aug 1, 2008 |
Bcep18194_A4780
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New product name: putative dioxygenase, OrbG. New product name confidence: Class 3. New homology: 98% identity to putative dioxygenase, OrbG[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bamb_1532
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New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 92% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcep18194_A4781
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New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 95% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen2424_1635
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New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen_1155
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New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcep18194_A4784
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New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 94% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bamb_1535
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New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 94% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen2424_1638
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New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen_1158
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New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bamb_1533
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New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 93% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcep18194_A4782
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New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 96% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen_1156
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New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Aug 1, 2008 |
Bcen2424_1636
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New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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| Sep 15, 2008 |
Bcep18194_B1816
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New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 33% identity and 53% similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Sep 15, 2008 |
Bcep18194_B2866
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New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 36% identity and 54 % similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Sep 15, 2008 |
Bcep18194_C7398
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New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 37% identity and 56 similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Sep 15, 2008 |
Bcep18194_C7399
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New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 35% identity and 55 % similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Sep 15, 2008 |
Bcep18194_B2865
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New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 41% identity and 54% similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Jan 29, 2010 |
BCAS0333
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Burkholderia cenocepacia
J2315 |
New product name: putative siderophore receptor. New product name confidence: Class 3. Dropped gene name: orbA.
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Pamela A. Sokol, University of Calgary
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| Apr 30, 2018 |
BPSS1517
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Burkholderia pseudomallei
K96243 |
New product name: putative type III secretion system chaperone protein (T3SS-3). New PubMed ID: 22092682. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BPSS1521
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Burkholderia pseudomallei
K96243 |
New product name: regulator and type III secretion system effector protein BbrD (T3SS-3). New PubMed ID: 25111708. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BMAA1545
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Burkholderia mallei
ATCC 23344 |
New product name: regulator of type III secretion system effector proteins BsaN (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New PubMed ID: 20345664. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1546.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BPSS1553
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Burkholderia pseudomallei
K96243 |
New product name: regulator of type III secretion system-3 (T3SS-3) BprP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BPSS1554
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Burkholderia pseudomallei
K96243 |
New product name: regulator of type III secretion system-3 (T3SS-3) BprQ. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27147217. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BPSS1520
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Burkholderia pseudomallei
K96243 |
New product name: regulator of type VI secretion system-1 BprC . New PubMed ID: 20345664. New PubMed ID: 21670170. New PubMed ID: 25111708. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. In a bprC mutant, the expression of virA and virG was downregulated to 30% and 42%, respectively, whereas tssA expression was decreased to 4% of wild-type level (PMID:20345664).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BMAA1529
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Burkholderia mallei
ATCC 23344 |
New product name: regulatory protein BprA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1530.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BPSS1530
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Burkholderia pseudomallei
K96243 |
New product name: regulatory protein BprA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BPSS1356
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Burkholderia pseudomallei
K96243 |
New product name: regulatory protein. New product name confidence: Class 1. New PubMed ID: 24927285. New PubMed ID: 22354666. New comment:
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BTH_II0131
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Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Rhs-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BTH_II0267
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Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Rhs-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
ACI79_RS06660
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Burkholderia gladioli
NGJ1 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 1. New subcellular localization: Host Associated (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment:
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
WJ59_RS21240
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Burkholderia gladioli
MSMB1756 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
LA03_RS18415
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Burkholderia gladioli
UCD-UG_CHAPALOTE |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
D590_RS24420
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Burkholderia gladioli
3848s-5 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
bgla_1g01370
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Burkholderia gladioli
BSR3 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
XF14_RS22130
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Burkholderia gladioli
SN82F6 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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