Log of Annotation Updates

2953 annotation updates returned Previous1..78910111213141516..30Next
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Date Locus Tag Strain Description Submitter
Apr 10, 2015 BMAA0728 New gene name: tssN. New product name confidence: Class 1. New PubMed ID: 23800426. New genomic context: T6SS-1 gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2093 Burkholderia thailandensis E264 ATCC 700388 New gene name: malF. New product name: polyketide synthase MalF. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS06440 Burkholderia dolosa AU0158 New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1897 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssF-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMASAVP1_0599 Burkholderia mallei SAVP1 New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA1520 New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2749 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA1517 New PubMed ID: 17555434. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2094 Burkholderia thailandensis E264 ATCC 700388 New gene name: malG. New product name: MalG. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1683 Burkholderia pseudomallei K96243 New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1896 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssG-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0219 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMIDs: 22919579, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10247_A1666 Burkholderia mallei NCTC 10247 New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BTH_II0840 Burkholderia thailandensis E264 ATCC 700388 New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2758 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BTH_II0863 Burkholderia thailandensis E264 ATCC 700388 New product name confidence: Class 1. New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001230 .New subcellular localization PMID: 24452686 .New PubMed ID: 24452686. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2095 Burkholderia thailandensis E264 ATCC 700388 New gene name: malI. New product name: MalI. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster. New comment: Incorrect translation start site called at 2571743 during initial annotation. The site was changed to 2573204 based on alignment with B. pseudomallei K96243 BPSS0303. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0697 Burkholderia thailandensis E264 ATCC 700388 New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1895 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssH-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS20325 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMIDs: 22919579, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_0710 Burkholderia mallei NCTC 10229 New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1533 Burkholderia pseudomallei K96243 New product name confidence: Class 1. New PubMed ID: 20951592. New PubMed ID: 11296219. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2764 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1502 Burkholderia pseudomallei K96243 New product name: TssH-5. New product name confidence: Class 1. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2096 Burkholderia thailandensis E264 ATCC 700388 New gene name: malJ. New product name: MalJ. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 bglu_2g08560 Burkholderia glumae BGR1 New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1894 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssI-4a. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0223 Burkholderia cenocepacia J2315 New product name: vitronectin-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: A BCAM0223::Tp mutant was deficient in hemagglutination, affected in adherence to vitronectin and in biofilm formation and showed attenuated virulence in the Galleria mellonella model of infection. . New PMIDs: 22919579, 22848588, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA0749 New gene name: bimA. New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A2163 Burkholderia pseudomallei 668 New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2797 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2097 Burkholderia thailandensis E264 ATCC 700388 New gene name: malK. New product name: MalK. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4607 Burkholderia multivorans ATCC 17616 New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1893 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssI-4b. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS20305 Burkholderia cenocepacia K56-2 New product name: vitronectin-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: A BCAM0223::Tp mutant was deficient in hemagglutination, affected in adherence to vitronectin and in biofilm formation and showed attenuated virulence in the Galleria mellonella model of infection. . New PMIDs: 22919579, 22848588, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS0796 Burkholderia pseudomallei K96243 New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 1. New PubMed ID: 20920184. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A057 Burkholderia pseudomallei 1710b New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2818 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA1865 New PubMed ID: 23800426. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2098 Burkholderia thailandensis E264 ATCC 700388 New gene name: malL. New product name: MalL. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS16965 Burkholderia ambifaria AMMD New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1892 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system-associated protein TagAB-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0224 Burkholderia cenocepacia J2315 New product name: collagen type 1-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: BCAM0224 is a trimeric autotransporter adhesin required for cell adhesion and virulence (PMID:20019083). New PMIDs: 22919579, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A1168 Burkholderia pseudomallei 668 New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A207 Burkholderia pseudomallei 1106a New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2827 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA0553 New PubMed ID: 23800426. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2099 Burkholderia thailandensis E264 ATCC 700388 New gene name: malM. New product name: MalM. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS21120 Burkholderia cenocepacia H111 New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1891 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system-associated protein TagB-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2418 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: Comparative DNA sequence analysis of BCAM2418 genes (structural and promoter regions) of various B. cenocepacia isolates revealed that their lengths greatly vary according to the number of repetitive elements (PMID:32097539). New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A238 Burkholderia pseudomallei 1710b New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10247_A0752 Burkholderia mallei NCTC 10247 New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2839 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_0018 Burkholderia pseudomallei 668 New gene name: gspM. New product name confidence: Class 1. New PubMed ID: 24866793. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I2393 Burkholderia thailandensis E264 ATCC 700388 New gene name: fenI. New product name confidence: Class 2. New PubMed ID: 29087175. New comment: .Annotation transferred from: UniProtKB:Q9L7W7. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS08375 Burkholderia cenocepacia K56-2Valvano New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1890 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system-associated protein TagC-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BURCENK562V_RS15440 Burkholderia cenocepacia K56-2Valvano New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A109 Burkholderia pseudomallei 1106a New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_2072 Burkholderia mallei NCTC 10229 New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2859 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_0019 Burkholderia pseudomallei 668 New gene name: gspN. New PubMed ID: 24866793. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0188 Burkholderia cenocepacia J2315 New PubMed ID: 28614901. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS33295 Burkholderia lata 383 New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1889 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system-associated protein TagD-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS07805 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10247_A1776 Burkholderia mallei NCTC 10247 New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL0001 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2865 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1512 Burkholderia pseudomallei K96243 New gene name: tssM. New product name confidence: Class 1. New PubMed ID: 24866793. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_1072 Burkholderia multivorans ATCC 17616 New gene name: hemP. New product name: Hemin uptake protein HemP. New product name confidence: Class 1. New PubMed ID: 28625994. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1010 Burkholderia cenocepacia J2315 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1888 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssJ-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM1115 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_0813 Burkholderia mallei NCTC 10229 New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL0067 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2871 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 Bcep1808_4200 Burkholderia vietnamiensis G4 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2297 Burkholderia cenocepacia J2315 New gene name: hemP. New product name: Hemin uptake protein HemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS06435 Burkholderia dolosa AU0158 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1887 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssK-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BURCENK562V_RS08875 Burkholderia cenocepacia K56-2Valvano New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA0649 New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BMAA0649. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL0074 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2872 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 Bcep1808_4201 Burkholderia vietnamiensis G4 New gene name: bceB. New product name: BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS20270 Burkholderia cenocepacia K56-2Valvano New gene name: hemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1682 Burkholderia pseudomallei K96243 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1886 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssL-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS15905 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL1705 Burkholderia pseudomallei K96243 New gene name: boaB. New product name: BoaB. New product name confidence: Class 1. New PubMed ID: 2092018. New PubMed ID: 25830295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL0075a Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2874 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 Bcep1808_4202 Burkholderia vietnamiensis G4 New gene name: bceC. New product name: BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3338 Burkholderia multivorans ATCC 17616 New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 1. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0699 Burkholderia thailandensis E264 ATCC 700388 New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1885 Burkholderia thailandensis E264 ATCC 700388 New product name: type VI secretion system protein TssM-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0236 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_2168 Burkholderia pseudomallei 1710b New gene name: boaB. New product name: BoaB. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSL1705. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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