Apr 30, 2018 |
BTH_II1235
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaM. New product name: BtaM. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
bglu_2g08540
|
Burkholderia glumae
BGR1 |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0130
|
Burkholderia thailandensis
E264 ATCC 700388 |
New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA1530
|
|
New product name confidence: Class 2. New PubMed ID: 20951592.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2608
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0744
|
|
New gene name: tssA. New product name synonym: `. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1236
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaN. New product name: BtaN. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
Bmul_4609
|
Burkholderia multivorans
ATCC 17616 |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0131
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Rhs-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BTH_II0841
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bipB. New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2611
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0743
|
|
New gene name: tssB. New product name confidence: Class 1. New PubMed ID: 17555434. New PubMed ID: 21300775. New PubMed ID: 24672321. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1237
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaO. New product name: BtaO. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BAMB_RS16950
|
Burkholderia ambifaria
AMMD |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0132
|
Burkholderia thailandensis
E264 ATCC 700388 |
New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS1532
|
Burkholderia pseudomallei
K96243 |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2612
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0742
|
|
New gene name: hcp1. New product name confidence: Class 1. New PubMed ID: 17555434. New PubMed ID: 21300775. New comment: Purified His-tagged BMAA0742 was recognized by glanders antiserum from a horse, a human and mice, indicating that this Hcp-family protein is produced in vivo during infection. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1238
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaP. New product name: BtaP. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
I35_RS21110
|
Burkholderia cenocepacia
H111 |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0133
|
Burkholderia thailandensis
E264 ATCC 700388 |
New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_A2162
|
Burkholderia pseudomallei
668 |
New gene name: bipB. New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2628
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0741
|
|
New gene name: tssC. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1239
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaQ. New product name: BtaQ. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BURCENK562V_RS08365
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0134
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssA-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1710b_A057
|
Burkholderia pseudomallei
1710b |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2648
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0740
|
|
New gene name: tssD. New product name confidence: Class 1. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1240
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaS. New product name: BtaS. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCEP18194_RS33305
|
Burkholderia lata
383 |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0135
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssG-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1106A_A207
|
Burkholderia pseudomallei
1106a |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2666
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0739
|
|
New gene name: tssE. New product name confidence: Class 1. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1241
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaT. New product name: BtaT. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1008
|
Burkholderia cenocepacia
J2315 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0136
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssF-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10247_A0753
|
Burkholderia mallei
NCTC 10247 |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2677
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0738
|
|
New gene name: clpV1. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 19284603. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1242
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaU. New product name: bactobolin hydroxylase BtaU. New PubMed ID: 19376863. New PubMed ID: 21615115. New PubMed ID: 20095633. New comment: Belongs to the bactobolin biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
AK34_RS06445
|
Burkholderia dolosa
AU0158 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0137
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssE2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10229_2073
|
Burkholderia mallei
NCTC 10229 |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2686
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0737
|
|
New gene name: vgrG1. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1512
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaI1. New product name: BtaI1. New PubMed ID: 19648250. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BPSS1684
|
Burkholderia pseudomallei
K96243 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0138
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagJ-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA1531
|
|
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2690
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0735
|
|
New gene name: tssH. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0804
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: btaI3. New product name: BtaI3. New PubMed ID: 19648250. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0695
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0139
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagK-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BTH_II0850
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bicP. New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2697
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0734
|
|
New gene name: tssI. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1681
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: thaA. New product name: ThaA. New PubMed ID: 29283242. New PubMed ID: 20853892. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
bglu_2g08550
|
Burkholderia glumae
BGR1 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0140
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssH-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS1523
|
Burkholderia pseudomallei
K96243 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2698
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0733
|
|
New gene name: tssJ. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2087
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malR. New product name: MalR. New gene name synonym: btaR4. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
Bmul_4608
|
Burkholderia multivorans
ATCC 17616 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1902
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssA-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BTH_II0875
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bimA. New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_A2152
|
Burkholderia pseudomallei
668 |
New gene name: bicP. New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2705
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0732
|
|
New gene name: tssK. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2088
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malA. New product name: polyketide synthase MalA. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BAMB_RS16960
|
Burkholderia ambifaria
AMMD |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1901
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssB-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS1492
|
Burkholderia pseudomallei
K96243 |
New gene name: bimA. New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 1. New PubMed ID: 15773977.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1710b_A056
|
Burkholderia pseudomallei
1710b |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2706
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0731
|
|
New gene name: tssL. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2090
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malC. New product name: MalC. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
I35_RS21115
|
Burkholderia cenocepacia
H111 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1900
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssC-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_A2118
|
Burkholderia pseudomallei
668 |
New gene name: bimA. New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1106A_A206
|
Burkholderia pseudomallei
1106a |
New gene name: bicP. New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2715
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0729.1
|
|
New gene name: icmF1. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2091
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malD. New product name: MalD. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCEP18194_RS33300
|
Burkholderia lata
383 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1899
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssD-4. New product name synonym: hemolysin-coregulated protein Hcp-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1710b_A052
|
Burkholderia pseudomallei
1710b |
New gene name: bimA. New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10247_A0765
|
Burkholderia mallei
NCTC 10247 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2716
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0729
|
|
New end coordinate: 738159. New gene name: tssM. New product name confidence: Class 1. New PubMed ID: 19168747. New comment: New translation start site at 738159 bp was confirmed by immunoblot analysis and complementation studies (PMID: 19168747 ). New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2092
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malE. New product name: MalE. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1009
|
Burkholderia cenocepacia
J2315 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1898
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssE-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1106A_A202
|
Burkholderia pseudomallei
1106a |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10229_2084
|
Burkholderia mallei
NCTC 10229 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2748
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|