| Strain Overview | |
|---|---|
| Organism Name | Burkholderia dolosa AU0158 (complete genome) |
| Species | Burkholderia dolosa |
| Strain | AU0158 |
| Description/Title | Microbe sample Burkholderia dolosa AU0158 |
| Annotated Genes | 5641 |
| Partial Genes | 45 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Isolation Source | Human Clinical (cystic fibrosis patient) |
| Sample Provider | |
|---|---|
| Name | Shannon Johnson |
| shannonj@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 472 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03144971 |
| NCBI Taxonomy ID | 350701 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia dolosa AU0158 chromosome 1, complete sequence. | |
| Burkholderia dolosa AU0158 chromosome 2, complete sequence. | |
| Burkholderia dolosa AU0158 chromosome 3, complete sequence. |
| Feature | Count |
|---|---|
| gene | 5641 |
| CDS | 5558 |
| pseudo | 73 |
| tRNA | 67 |
| rRNA | 15 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2410 |
| Cytoplasmic Membrane | 1163 |
| Periplasmic | 193 |
| Outer Membrane | 131 |
| Extracellular | 85 |
| Unknown | 1425 |
| Unknown (This protein may have multiple localization sites) | 153 |
| Flagellar | 22 |
| Fimbrial | 5 |
| T3SS | 3 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia dolosa AU0158 chromosome 1, complete sequence. | 3406596 bp | 66.9% |
Replicon details
|
| Burkholderia dolosa AU0158 chromosome 2, complete sequence. | 2168075 bp | 67.3% |
Replicon details
|
| Burkholderia dolosa AU0158 chromosome 3, complete sequence. | 834424 bp | 66.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |