Burkholderia dolosa AU0158

Strain Overview
Organism Name Burkholderia dolosa AU0158 (complete genome)
Species Burkholderia dolosa
Strain AU0158
Description/Title Microbe sample Burkholderia dolosa AU0158
Annotated Genes 5641
Partial Genes 45
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source Human Clinical (cystic fibrosis patient)
Sample Provider
Name Shannon Johnson
E-mail shannonj@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 472
gltB
21
trpB
20
lepA
291
phaC
13
gyrB
18
recA
24
atpD
30
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03144971
NCBI Taxonomy ID 350701
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia dolosa AU0158 chromosome 1, complete sequence.
Burkholderia dolosa AU0158 chromosome 2, complete sequence.
Burkholderia dolosa AU0158 chromosome 3, complete sequence.

Annotated Features

Feature Count
gene 5641
CDS 5558
pseudo 73
tRNA 67
rRNA 15
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2410
Cytoplasmic Membrane 1163
Periplasmic 193
Outer Membrane 131
Extracellular 85
Unknown 1425
Unknown (This protein may have multiple localization sites) 153
Flagellar 22
Fimbrial 5
T3SS 3

Replicons

Name Length GC
Burkholderia dolosa AU0158 chromosome 1, complete sequence. 3406596 bp 66.9%
Replicon details
Burkholderia dolosa AU0158 chromosome 2, complete sequence. 2168075 bp 67.3%
Replicon details
Burkholderia dolosa AU0158 chromosome 3, complete sequence. 834424 bp 66.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF