Burkholderia pseudomallei 1026b

Strain Overview
Organism Name Burkholderia pseudomallei 1026b - Assembly GCF_000260515.1
Species Burkholderia pseudomallei
Strain 1026b
Description/Title Sample from Burkholderia pseudomallei 1026b
Annotated Genes 6264
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease septicemic melioidosis
Geographic Location
Location Name Thailand
Isolation Source blood
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected 1993

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 102
narK
4
gltB
4
lipA
1
ndh
1
lepA
1
ace
3
gmhD
12
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604257
NCBI Taxonomy ID 884204
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia pseudomallei 1026b chromosome 1, complete sequence.
Burkholderia pseudomallei 1026b chromosome 2, complete sequence.

Annotated Features

Feature Count
gene 6262
CDS 6069
tRNA 59
rRNA 12
pseudo 1

Subcellular Localization

Localization Count
Cytoplasmic 2513
Cytoplasmic Membrane 1197
Periplasmic 200
Outer Membrane 137
Extracellular 102
Unknown 1785
Unknown (This protein may have multiple localization sites) 169
Flagellar 24
Fimbrial 7
T3SS 6

Breakdown by COG Category

Feature Count
General function prediction only 553
Amino acid transport and metabolism 473
Function unknown 471
Transcription 426
Cell wall/membrane/envelope biogenesis 338
Energy production and conversion 317
Carbohydrate transport and metabolism 305
Inorganic ion transport and metabolism 248
Lipid transport and metabolism 242
Signal transduction mechanisms 241
Secondary metabolites biosynthesis, transport and catabolism 203
Coenzyme transport and metabolism 196
Translation, ribosomal structure and biogenesis 181
Intracellular trafficking, secretion, and vesicular transport 174
Posttranslational modification, protein turnover, chaperones 166
Replication, recombination and repair 152
Cell motility 127
Nucleotide transport and metabolism 92
Defense mechanisms 60
Cell cycle control, cell division, chromosome partitioning 32
Chromatin structure and dynamics 5
Extracellular structures 2
RNA processing and modification 1

Replicons

Name Length GC
Burkholderia pseudomallei 1026b chromosome 1, complete sequence. 4092668 bp 67.9%
Replicon details
Burkholderia pseudomallei 1026b chromosome 2, complete sequence. 3138747 bp 68.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF