Burkholderia glumae BGR1

Strain Overview
Organism Name Burkholderia glumae BGR1
Species Burkholderia glumae
Strain BGR1
Description/Title Sample from Burkholderia glumae BGR1
Annotated Genes 6258
Partial Genes
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000022645.2
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603166
NCBI Taxonomy ID 626418
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia glumae BGR1 chromosome 1, complete sequence.
Burkholderia glumae BGR1 chromosome 2, complete sequence.
Burkholderia glumae BGR1 plasmid bglu_1p, complete sequence.
Burkholderia glumae BGR1 plasmid bglu_2p, complete sequence.
Burkholderia glumae BGR1 plasmid bglu_3p, complete sequence.
Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence.

Annotated Features

Feature Count
gene 6303
CDS 5760
tRNA 66
pseudo 34
rRNA 15

Subcellular Localization

Localization Count
Cytoplasmic 2522
Cytoplasmic Membrane 1159
Periplasmic 158
Outer Membrane 115
Extracellular 96
Unknown 1551
Unknown (This protein may have multiple localization sites) 159
Flagellar 26
Fimbrial 5
T3SS 2

Breakdown by COG Category

Feature Count
General function prediction only 564
Amino acid transport and metabolism 421
Function unknown 420
Transcription 417
Cell wall/membrane/envelope biogenesis 328
Carbohydrate transport and metabolism 310
Signal transduction mechanisms 299
Energy production and conversion 298
Replication, recombination and repair 277
Lipid transport and metabolism 206
Coenzyme transport and metabolism 203
Inorganic ion transport and metabolism 201
Translation, ribosomal structure and biogenesis 180
Posttranslational modification, protein turnover, chaperones 169
Cell motility 156
Secondary metabolites biosynthesis, transport and catabolism 155
Intracellular trafficking, secretion, and vesicular transport 146
Nucleotide transport and metabolism 92
Defense mechanisms 51
Cell cycle control, cell division, chromosome partitioning 42
RNA processing and modification 1
Chromatin structure and dynamics 1

Replicons

6 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF