Burkholderia pseudomallei 1710b

Strain Overview
Organism Name Burkholderia pseudomallei 1710b
Species Burkholderia pseudomallei
Strain 1710b
Description/Title Sample from Burkholderia pseudomallei 1710b
Annotated Genes 6239
Partial Genes
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 177
lipA
1
lepA
3
ace
1
ndh
1
narK
3
gltB
1
gmhD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604036
NCBI Taxonomy ID 320372
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia pseudomallei 1710b chromosome I, complete sequence.
Burkholderia pseudomallei 1710b chromosome II, complete sequence.

Annotated Features

Feature Count
gene 6419
CDS 6341
tRNA 60
rRNA 12
pseudo 3
misc_RNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3011
Cytoplasmic Membrane 1216
Periplasmic 185
Outer Membrane 145
Extracellular 154
Unknown 1637
Unknown (This protein may have multiple localization sites) 207
Flagellar 28
Fimbrial 9
Host Associated 1
T3SS 5

Breakdown by COG Category

Feature Count
General function prediction only 515
Amino acid transport and metabolism 469
Function unknown 462
Transcription 422
Cell wall/membrane/envelope biogenesis 341
Energy production and conversion 318
Carbohydrate transport and metabolism 305
Inorganic ion transport and metabolism 246
Signal transduction mechanisms 240
Lipid transport and metabolism 239
Secondary metabolites biosynthesis, transport and catabolism 205
Coenzyme transport and metabolism 198
Translation, ribosomal structure and biogenesis 188
Intracellular trafficking, secretion, and vesicular transport 181
Posttranslational modification, protein turnover, chaperones 170
Replication, recombination and repair 169
Cell motility 130
Nucleotide transport and metabolism 93
Defense mechanisms 59
Cell cycle control, cell division, chromosome partitioning 31
Chromatin structure and dynamics 5
Extracellular structures 2
RNA processing and modification 1

Replicons

Name Length GC
Burkholderia pseudomallei 1710b chromosome I, complete sequence. 4126292 bp 67.6%
Replicon details
Burkholderia pseudomallei 1710b chromosome II, complete sequence. 3181762 bp 68.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF