Strain Overview | |
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Organism Name | Burkholderia mallei NCTC 10247 |
Species | Burkholderia mallei |
Strain | NCTC 10247 |
Description/Title | Sample from Burkholderia mallei NCTC 10247 |
Annotated Genes | 5180 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location |
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Sample Provider | |
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Name | |
johnston@ncbi.nlm.nih.gov | |
Institution | NCBI |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604033 |
NCBI Taxonomy ID | 320389 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Burkholderia mallei NCTC 10247 chromosome I, complete sequence. | |
Burkholderia mallei NCTC 10247 chromosome II, complete sequence. |
Feature | Count |
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gene | 5925 |
CDS | 5415 |
tRNA | 56 |
rRNA | 10 |
pseudo | 8 |
ncRNA | 5 |
Localization | Count |
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Cytoplasmic | 2252 |
Cytoplasmic Membrane | 935 |
Periplasmic | 147 |
Outer Membrane | 100 |
Extracellular | 74 |
Unknown | 1894 |
Unknown (This protein may have multiple localization sites) | 133 |
Flagellar | 24 |
Fimbrial | 3 |
Host Associated | 2 |
T3SS | 3 |
Feature | Count |
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General function prediction only | 427 |
Amino acid transport and metabolism | 394 |
Function unknown | 341 |
Transcription | 338 |
Energy production and conversion | 265 |
Cell wall/membrane/envelope biogenesis | 260 |
Replication, recombination and repair | 256 |
Carbohydrate transport and metabolism | 239 |
Inorganic ion transport and metabolism | 213 |
Lipid transport and metabolism | 193 |
Signal transduction mechanisms | 188 |
Translation, ribosomal structure and biogenesis | 177 |
Coenzyme transport and metabolism | 175 |
Secondary metabolites biosynthesis, transport and catabolism | 144 |
Posttranslational modification, protein turnover, chaperones | 138 |
Intracellular trafficking, secretion, and vesicular transport | 126 |
Cell motility | 97 |
Nucleotide transport and metabolism | 84 |
Defense mechanisms | 44 |
Cell cycle control, cell division, chromosome partitioning | 31 |
Chromatin structure and dynamics | 5 |
Extracellular structures | 3 |
RNA processing and modification | 1 |
Name | Length | GC | |
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Burkholderia mallei NCTC 10247 chromosome I, complete sequence. | 3495687 bp | 68.2% |
Replicon details
|
Burkholderia mallei NCTC 10247 chromosome II, complete sequence. | 2352693 bp | 69.0% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |