Burkholderia mallei NCTC 10229

Strain Overview
Organism Name Burkholderia mallei NCTC 10229
Species Burkholderia mallei
Strain NCTC 10229
Description/Title Sample from Burkholderia mallei NCTC 10229
Annotated Genes 5097
Partial Genes
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604032
NCBI Taxonomy ID 412022
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia mallei NCTC 10229 chromosome I, complete sequence.
Burkholderia mallei NCTC 10229 chromosome II, complete sequence.

Annotated Features

Feature Count
gene 5623
CDS 5488
tRNA 56
pseudo 21
rRNA 10
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2270
Cytoplasmic Membrane 978
Periplasmic 159
Outer Membrane 103
Extracellular 76
Unknown 1894
Unknown (This protein may have multiple localization sites) 149
Flagellar 24
Fimbrial 3
Host Associated 2
T3SS 4

Breakdown by COG Category

Feature Count
General function prediction only 428
Amino acid transport and metabolism 408
Function unknown 369
Transcription 351
Cell wall/membrane/envelope biogenesis 269
Energy production and conversion 263
Replication, recombination and repair 257
Carbohydrate transport and metabolism 256
Inorganic ion transport and metabolism 225
Lipid transport and metabolism 207
Signal transduction mechanisms 197
Coenzyme transport and metabolism 174
Translation, ribosomal structure and biogenesis 174
Secondary metabolites biosynthesis, transport and catabolism 155
Posttranslational modification, protein turnover, chaperones 150
Intracellular trafficking, secretion, and vesicular transport 131
Cell motility 102
Nucleotide transport and metabolism 82
Defense mechanisms 40
Cell cycle control, cell division, chromosome partitioning 31
Chromatin structure and dynamics 5
Extracellular structures 2
RNA processing and modification 1

Replicons

Name Length GC
Burkholderia mallei NCTC 10229 chromosome I, complete sequence. 3458208 bp 68.2%
Replicon details
Burkholderia mallei NCTC 10229 chromosome II, complete sequence. 2284095 bp 68.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF