Burkholderia cenocepacia MC0-3

Strain Overview
Organism Name Burkholderia cenocepacia MC0-3
Species Burkholderia cenocepacia
Strain MC0-3
Description/Title Sample from Burkholderia cenocepacia MC0-3
Annotated Genes 7071
Partial Genes
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name United States:Michigan
Isolation Source Rhizosphere, maize
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected 2004

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 281
trpB
14
atpD
16
recA
69
phaC
46
gltB
15
lepA
68
gyrB
272
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598404
NCBI Taxonomy ID 406425
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence.
Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence.
Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence.

Annotated Features

Feature Count
gene 7176
CDS 6994
tRNA 67
pseudo 20
rRNA 18
ncRNA 2
tmRNA 1
misc_RNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3096
Cytoplasmic Membrane 1559
Periplasmic 233
Outer Membrane 171
Extracellular 92
Unknown 1945
Unknown (This protein may have multiple localization sites) 242
Flagellar 42
Fimbrial 7
Host Associated 1
T3SS 5

Breakdown by COG Category

Feature Count
General function prediction only 721
Transcription 709
Amino acid transport and metabolism 633
Function unknown 481
Carbohydrate transport and metabolism 432
Cell wall/membrane/envelope biogenesis 403
Energy production and conversion 401
Signal transduction mechanisms 313
Lipid transport and metabolism 310
Inorganic ion transport and metabolism 301
Coenzyme transport and metabolism 220
Secondary metabolites biosynthesis, transport and catabolism 217
Replication, recombination and repair 206
Translation, ribosomal structure and biogenesis 201
Posttranslational modification, protein turnover, chaperones 189
Intracellular trafficking, secretion, and vesicular transport 185
Cell motility 142
Nucleotide transport and metabolism 107
Defense mechanisms 70
Cell cycle control, cell division, chromosome partitioning 39
Chromatin structure and dynamics 3
Extracellular structures 3
RNA processing and modification 1

Replicons

Name Length GC
Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence. 3532883 bp 66.7%
Replicon details
Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence. 3213911 bp 66.6%
Replicon details
Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence. 1224595 bp 66.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF