Burkholderia ambifaria AMMD

Strain Overview
Organism Name Burkholderia ambifaria AMMD - Assembly GCF_000203915.1
Species Burkholderia ambifaria
Strain AMMD
Description/Title Sample from Burkholderia ambifaria AMMD
Annotated Genes 6530
Partial Genes 34
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 77
atpD
35
phaC
59
gyrB
123
lepA
103
recA
98
trpB
49
gltB
25
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598309
NCBI Taxonomy ID 339670
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia ambifaria AMMD chromosome 1, complete sequence.
Burkholderia ambifaria AMMD chromosome 2, complete sequence.
Burkholderia ambifaria AMMD chromosome 3, complete sequence.
Burkholderia cepacia AMMD plasmid 1, complete sequence.

Annotated Features

Feature Count
gene 6530
CDS 6439
tRNA 69
pseudo 53
rRNA 18
misc_RNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2885
Cytoplasmic Membrane 1380
Periplasmic 223
Outer Membrane 154
Extracellular 88
Unknown 1540
Unknown (This protein may have multiple localization sites) 200
Flagellar 19
Fimbrial 8
T3SS 4

Replicons

Name Length GC
Burkholderia ambifaria AMMD chromosome 1, complete sequence. 3556545 bp 66.9%
Replicon details
Burkholderia ambifaria AMMD chromosome 2, complete sequence. 2646969 bp 66.8%
Replicon details
Burkholderia ambifaria AMMD chromosome 3, complete sequence. 1281472 bp 66.5%
Replicon details
Burkholderia cepacia AMMD plasmid 1, complete sequence. 43581 bp 65.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF