| Strain Overview | |
|---|---|
| Organism Name | Burkholderia lata 383 |
| Species | Burkholderia lata |
| Strain | 383 |
| Description/Title | Sample from Burkholderia lata |
| Annotated Genes | 7643 |
| Partial Genes | 41 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Trinidad |
| Isolation Source | forest soil |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | Dr A. C. Hayward |
| Institution | |
| Date Collected | 1958 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02598262 |
| NCBI Taxonomy ID | 482957 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia sp. 383 chromosome 1, complete sequence. | |
| Burkholderia sp. 383, complete sequence. | |
| Burkholderia sp. 383 chromosome 3, complete sequence. |
| Feature | Count |
|---|---|
| gene | 7643 |
| CDS | 7552 |
| tRNA | 69 |
| pseudo | 57 |
| rRNA | 18 |
| misc_RNA | 2 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3364 |
| Cytoplasmic Membrane | 1626 |
| Periplasmic | 241 |
| Outer Membrane | 181 |
| Extracellular | 105 |
| Unknown | 1814 |
| Unknown (This protein may have multiple localization sites) | 224 |
| Flagellar | 22 |
| Fimbrial | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia sp. 383 chromosome 1, complete sequence. | 3694126 bp | 66.2% |
Replicon details
|
| Burkholderia sp. 383, complete sequence. | 3587082 bp | 66.7% |
Replicon details
|
| Burkholderia sp. 383 chromosome 3, complete sequence. | 1395069 bp | 65.3% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |