Burkholderia cenocepacia J2315 Pathogen Associated Gene Analysis

This analysis is based on the study "The association of virulence factors with genomic islands" (Ho Sui, Fedynak, Hsiao, Langille, and Brinkman (2009), PLoS ONE).

BLAST similarity searches were performed against the deduced proteomes of 1292 pathogenic and 1490 non-pathogenic sequenced prokaryotic genomes downloaded from the National Center for Biotechnology Information FTP site in December 2014. An e-value cut-off of 10-7 was used to exclude distant homologs. Pathogen or non-pathogen status for each genome was obtained through the NCBI Complete Microbial Genomes webpage (Haft et al. 2005) and then manually curated to ensure data quality and completeness.

The current categories for 'Status' are:

1) Pathogen: Protein only had BLAST hits to proteins in pathogenic strains.

2) Non-Pathogen: Protein only had BLAST hits to proteins in non-pathogenic strains.

3) Common: The protein had BLAST hits to proteins in both pathogenic and non-pathogenic strains.

The 'Virulence Evidence?' column indicates whether any evidence is available in the database for this gene being virulence associated (i.e. VFDB, Victors Virulence Factors, curation by Burkholderia Genome Database, etc.).

Important note on this analysis: The list of genes defined as being pathogen-associated will change as more genomes are sequenced. This analysis will be updated at a later time in order to reflect this.

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291 results were returned for your query Previous12345678910..15Next Ordered by Locus Tag , descending
Replicon Name Locus Tag Gene Symbol Product Description Status Genus Hits Virulence Evidence?
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0639 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0633 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0629 putative lipoprotein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0625 putative lipoprotein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0621 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0600 hypothetical protein Pathogen 2 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0572 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0548 BcepMu7 hypothetical protein Pathogen 3 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0544 BcepMu11 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0541 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0540a BcepMu15 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0537 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0532a BcepMu24 putative proline-rich protein Rz1 Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0515 BcepMu42 putative Lambda G-pre-tape measure frameshift protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0514 BcepMu43 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0453 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0429 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0411 hypothetical protein Pathogen 3 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0407 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0282 hypothetical protein Pathogen 1 -