Motif View

Internal ID 1761258
Source Database TransTermHP TERM 1017
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1017
Sequence GGTGCAACCTATCTCTCAATTTGGTTGCACC
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Start 3249153
End 3249183
Strand -
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCACGCAATAAAAA(5' tail) GGTGCAACCAA(5' stem) ATTGAGAGA(loop) TAGGTTGCACC(3' stem) CATAAGTTAGTCAAT(3' tail). Confidence: 93. overlap 3249173 3249175

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685