Strain |
Burkholderia cenocepacia J2315
GCF_000009485.1|latest |
Locus Tag |
BCAL1879
|
NCBI Locus Tag | QU43_RS45940 |
Name |
hfq
|
Replicon | chromosome 1 |
Genomic location | 2074649 - 2074888 (- strand) |
RefSeq | WP_006399927.1 |
GI | 206560242 |
Entrez | 6933706 |
GI | 206560242 |
INSDC | CAR52179.1 |
NCBI Locus Tag | QU43_RS45940 |
NCBI Old Locus Tag | BCAL1879 |
RefSeq | WP_006399927.1,GeneID |
UniParc | UPI000029AD5F |
UniProtKB Acc | B4EAW4 |
UniProtKB ID | HFQ_BURCJ |
UniRef100 | UniRef100_Q1BGW9 |
UniRef50 | UniRef50_Q0C0N8 |
UniRef90 | UniRef90_A3MK69 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
Hfq
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 1.70 |
Kyte-Doolittle Hydrophobicity Value | -0.084 |
Molecular Weight (kDa) | 8849.1 |
Isoelectric Point (pI) | 9.01 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3SB2 | CHAPERONE | 06/03/11 | Crystal Structure of the RNA chaperone Hfq from Herbaspirillum seropedicae SMR1 | HERBASPIRILLUM SEROPEDICAE | 2.6301 | X-RAY DIFFRACTION | 95.7 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 282 genera
|
Burkholderia Ortholog Group |
BG001644 (652 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BCAL1879
Search term: hfq
Search term: Hfq
|
The second RNA chaperone, Hfq2, is also required for survival under stress and full virulence of Burkholderia cenocepacia J2315.
Ramos CG, Sousa SA, Grilo AM, Feliciano JR, Leitão JH
J Bacteriol 2011 Apr;193(7):1515-26
PubMed ID: 21278292
|
The hfq gene is required for stress resistance and full virulence of Burkholderia cepacia to the nematode Caenorhabditis elegans.
Sousa SA, Ramos CG, Moreira LM, Leitão JH
Microbiology 2010 Mar;156(Pt 3):896-908
PubMed ID: 19942656
|
Experimental identification of small non-coding regulatory RNAs in the opportunistic human pathogen Burkholderia cenocepacia J2315.
Ramos CG, Grilo AM, da Costa PJ, Leitão JH
Genomics 2013 Feb;101(2):139-48
PubMed ID: 23142676
|