Burkholderia pseudomallei 1710b, BURPS1710b_A0554 (bopC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Burkholderia pseudomallei 1710b
GCF_000012785.1|latest
Locus Tag
BURPS1710b_A0554
NCBI Locus TagBURPS1710B_RS21250
Name
bopC
Replicon chromosome II
Genomic location 748519 - 750048 (- strand)

Cross-References

RefSeq YP_335713.1
GI 76819070
Entrez 3693607
GI 76819070
INSDC ABA53017.1
NCBI Locus Tag BURPS1710B_RS21250
NCBI Old Locus Tag BURPS1710b_A0554
RefSeq YP_335713.1
UniParc UPI00005C38A6
UniProtKB Acc Q3JL40
UniProtKB ID Q3JL40_BURP1
UniRef100 UniRef100_C4I6I2
UniRef50 UniRef50_Q63K50
UniRef90 UniRef90_Q63K50

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) -1.01
Kyte-Doolittle Hydrophobicity Value -0.376
Molecular Weight (kDa) 55725.7
Isoelectric Point (pI) 6.88

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Virulence Evidence

Source 1
Database VFDB : VF0428
Category T3SS-3
Evidence ECO:0000250
sequence similarity evidence used in manual assertion
Host Organism
Notes
Annotation transferred from Burkholderia pseudomallei K96243
Reference 17984080

Pathogen Association Analysis

Results
Pathogenic
Found only in pathogenic strains
Hits to this gene were found in 3 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG020942 (270 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BURPS1710b_A0554
Search term: bopC

Human Homologs

References

Unraveling type III secretion systems in the highly versatile Burkholderia pseudomallei.
Sun GW, Gan YH
Trends Microbiol 2010 Dec;18(12):561-8
PubMed ID: 20951592