Burkholderia cenocepacia MC0-3, Bcenmc03_3387 (sigJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Burkholderia cenocepacia MC0-3
GCF_000019505.1|latest
Locus Tag
Bcenmc03_3387
NCBI Locus TagBCENMC03_RS17140
Name
sigJ
Replicon chromosome 2
Genomic location 240152 - 241687 (+ strand)

Cross-References

RefSeq WP_012338341.1
GI 170735771
Entrez 6126121
GI 170735771
NCBI Locus Tag BCENMC03_RS17140
NCBI Old Locus Tag Bcenmc03_3387
RefSeq WP_012338341.1
UniProtKB Acc B1K1W2
UniProtKB ID B1K1W2_BURCC

Product

Feature Type CDS
Coding Frame 1
Product Name
RpoD family RNA polymerase sigma factor
Product Name Confidence: Class 1
Synonyms sigma factor 70 SigJ
Evidence for Translation
Charge (pH 7) -9.62
Kyte-Doolittle Hydrophobicity Value -0.239
Molecular Weight (kDa) 55154.4
Isoelectric Point (pI) 5.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG003244 (490 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Bcenmc03_3387
Search term: sigJ

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948