Burkholderia cenocepacia MC0-3, Bcenmc03_2388 (ecfE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Burkholderia cenocepacia MC0-3
GCF_000019505.1|latest
Locus Tag
Bcenmc03_2388
NCBI Locus TagBCENMC03_RS12115
Name
ecfE
Replicon chromosome 1
Genomic location 2672534 - 2673115 (- strand)

Cross-References

RefSeq YP_001765671.1
GI 170733724
Entrez 6124052
GI 170733724
NCBI Locus Tag BCENMC03_RS12115
NCBI Old Locus Tag Bcenmc03_2388
RefSeq YP_001765671.1
UniProtKB Acc B1JWB2
UniProtKB ID B1JWB2_BURCC

Product

Feature Type CDS
Coding Frame 1
Product Name
ECF subfamily RNA polymerase sigma-24 factor
Product Name Confidence: Class 1
Synonyms sigma factor 70 EcfE
Evidence for Translation
Charge (pH 7) -5.03
Kyte-Doolittle Hydrophobicity Value -0.576
Molecular Weight (kDa) 22244.9
Isoelectric Point (pI) 5.17

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 379 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG006145 (148 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Bcenmc03_2388
Search term: ecfE

Human Homologs

References

No references are associated with this feature.