Burkholderia cenocepacia MC0-3, Bcenmc03_1607 (ecfI)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Burkholderia cenocepacia MC0-3
GCF_000019505.1|latest
Locus Tag
Bcenmc03_1607
NCBI Locus TagBCENMC03_RS08150
Name
ecfI
Replicon chromosome 1
Genomic location 1777694 - 1778362 (+ strand)

Cross-References

RefSeq WP_006476053.1
GI 170732955
Entrez 6123283
GI 170732955
NCBI Locus Tag BCENMC03_RS08150
NCBI Old Locus Tag Bcenmc03_1607
RefSeq WP_006476053.1
UniProtKB Acc B1K126
UniProtKB ID B1K126_BURCC

Product

Feature Type CDS
Coding Frame 1
Product Name
extracytoplasmic-function sigma-70 factor
Product Name Confidence: Class 2
Synonyms sigma factor 70 EcfI
Evidence for Translation
Charge (pH 7) 2.26
Kyte-Doolittle Hydrophobicity Value -0.191
Molecular Weight (kDa) 24510.7
Isoelectric Point (pI) 7.85

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 111 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG001452 (638 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Bcenmc03_1607
Search term: ecfI

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948