Burkholderia thailandensis E264; ATCC 700388, BTH_II0265 (vgrG-6)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Feature Overview

Strain Burkholderia thailandensis E264; ATCC 700388
GCF_000012365.1|latest
Locus Tag
BTH_II0265
NCBI Locus TagBTH_RS01375
Name
vgrG-6
Synonym: vrgG-6
Replicon chromosome II
Genomic location 326364 - 328559 (+ strand)
Transposon Mutants 4 transposon mutants in E264; ATCC 700388
CommentThis gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).

Cross-References

RefSeq YP_438467.1
GI 83717324
Entrez 3846754
GI 83717324
NCBI Locus Tag BTH_RS01375
NCBI Old Locus Tag BTH_II0265
RefSeq YP_438467.1
UniProtKB Acc Q2T8N2
UniProtKB ID Q2T8N2_BURTA

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system protein TssI-6
Product Name Confidence: Class 2
Synonyms Rhs element Vgr protein
Evidence for Translation
Charge (pH 7) -8.52
Kyte-Doolittle Hydrophobicity Value -0.607
Molecular Weight (kDa) 81137.5
Isoelectric Point (pI) 6.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 159 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG019167 (418 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BTH_II0265
Search term: vgrG-6

References

Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions.
Schwarz S, West TE, Boyer F, Chiang WC, Carl MA, Hood RD, Rohmer L, Tolker-Nielsen T, Skerrett SJ, Mougous JD.
PLoS Pathog. 2010 Aug 26;6(8)
PubMed ID: 20865170
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS.
Microbiology. 2007 Aug;153(Pt 8):2689-99.
PubMed ID: 17660433
PubMed ID: 22007185
Type VI secretion is a major virulence determinant in Burkholderia mallei.
Schell MA(1), Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, Chen D, Lipscomb L, Kim HS, Mrázek J, Nierman WC, Deshazer D.
Mol Microbiol. 2007 Jun;64(6):1466-85.
PubMed ID: 17555434