Burkholderia thailandensis E264; ATCC 700388, BTH_II0258 (tssB-6)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia thailandensis E264; ATCC 700388
GCF_000012365.1|latest
Locus Tag
BTH_II0258
NCBI Locus TagBTH_RS01340
Name
tssB-6
Replicon chromosome II
Genomic location 317322 - 317903 (+ strand)
CommentThis gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).

Cross-References

RefSeq YP_438460.1
GI 83717683
Entrez 3844923
GI 83717683
INSDC AIP28390.1
NCBI Locus Tag BTH_RS01340
NCBI Old Locus Tag BTH_II0258
RefSeq WP_009895017.1
UniParc UPI000066789D
UniProtKB Acc Q2T8N9
UniProtKB ID Q2T8N9_BURTA
UniRef100 UniRef100_Q2T8N9
UniRef50 UniRef50_A1UYZ1
UniRef90 UniRef90_A1UYZ1

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system protein TssB-6
Product Name Confidence: Class 2
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) -8.52
Kyte-Doolittle Hydrophobicity Value -0.349
Molecular Weight (kDa) 21190.6
Isoelectric Point (pI) 4.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 108 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG016587 (501 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BTH_II0258
Search term: tssB-6

References

Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions.
Schwarz S, West TE, Boyer F, Chiang WC, Carl MA, Hood RD, Rohmer L, Tolker-Nielsen T, Skerrett SJ, Mougous JD.
PLoS Pathog. 2010 Aug 26;6(8)
PubMed ID: 20865170
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS.
Microbiology. 2007 Aug;153(Pt 8):2689-99.
PubMed ID: 17660433
PubMed ID: 22007185
Type VI secretion is a major virulence determinant in Burkholderia mallei.
Schell MA(1), Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, Chen D, Lipscomb L, Kim HS, Mrázek J, Nierman WC, Deshazer D.
Mol Microbiol. 2007 Jun;64(6):1466-85.
PubMed ID: 17555434