Burkholderia pseudomallei K96243, BPSS2096 (TssF-6)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSS2096
Name
TssF-6
Replicon chromosome 2
Genomic location 2837548 - 2839419 (- strand)

Cross-References

RefSeq YP_112095.1
GI 53723110
Entrez 3095467
GI 53723110
INSDC CAH39576.1
NCBI Locus Tag BPSS2096
RefSeq YP_112095.1,GeneID
UniParc UPI000043BF46
UniProtKB Acc Q63IH7
UniProtKB ID Q63IH7_BURPS
UniRef100 UniRef100_A3P950
UniRef50 UniRef50_I1WW23
UniRef90 UniRef90_I1WW23

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 8.13
Kyte-Doolittle Hydrophobicity Value -0.140
Molecular Weight (kDa) 68672.5
Isoelectric Point (pI) 8.37

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 105 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG016583 (508 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS2096
Search term: TssF-6

References

In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433