Burkholderia pseudomallei K96243, BPSS1628 (bpspD2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSS1628
Name
bpspD2
Synonym: sctO
Replicon chromosome 2
Genomic location 2202263 - 2202790 (+ strand)
CommentThis gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238).

Cross-References

RefSeq YP_111636.1
GI 53722651
Entrez 3096887
GI 53722651
INSDC CAH39103.1
NCBI Locus Tag BPSS1628
RefSeq YP_111636.1,GeneID
UniParc UPI000043BD7F
UniProtKB Acc Q63JT6
UniProtKB ID Q63JT6_BURPS
UniRef100 UniRef100_Q63JT6
UniRef50 UniRef50_Q2T7A9
UniRef90 UniRef90_Q63JT6

Product

Feature Type CDS
Coding Frame 1
Product Name
type III secretion system stalk protein BpspD2 (T3SS-2)
Product Name Confidence: Class 2
Synonyms type III secretion protein
Evidence for Translation
Charge (pH 7) 6.14
Kyte-Doolittle Hydrophobicity Value -0.630
Molecular Weight (kDa) 19288.2
Isoelectric Point (pI) 10.14

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Pathogenic
Found only in pathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG020953 (429 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS1628
Search term: bpspD2

References

Type III secretion system cluster 3 is required for maximal virulence of Burkholderia pseudomallei in a hamster infection model.
Warawa J, Woods DE
FEMS Microbiol Lett 2005 Jan 1;242(1):101-8
PubMed ID: 15621426
Type III Secretion in the Melioidosis Pathogen <i>Burkholderia pseudomallei</i>.
Vander Broek CW, Stevens JM
Front Cell Infect Microbiol 2017;7:255
PubMed ID: 28664152