Strain |
Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest |
Locus Tag |
BPSS0518
|
Name |
tssF-6
Synonym: hcp2 Synonym: tssD-4 |
Replicon | chromosome 2 |
Genomic location | 705288 - 705815 (+ strand) |
Comment | Gene is part of a cluster known as the type VI secretion system gene cluster tss-4 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-2 cluster later (PMID:22007185) |
Comment | Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) |
RefSeq | YP_110539.1 |
GI | 53721554 |
Entrez | 3096785 |
GI | 53721554 |
INSDC | CAH37975.1 |
NCBI Locus Tag | BPSS0518 |
RefSeq | YP_110539.1,GeneID |
UniParc | UPI000043B951 |
UniProtKB Acc | Q63MY0 |
UniProtKB ID | Q63MY0_BURPS |
UniRef100 | UniRef100_A0A069B759 |
UniRef50 | UniRef50_A1UWJ9 |
UniRef90 | UniRef90_A1UWJ9 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
type VI secretion system protein TssF-6
|
Synonyms |
hypothetical protein type VI secretion system protein TssD-4 |
Evidence for Translation |
Detected in B. pseudomallei strain DD503 using trypsin shaving and mass spectrometry (PMID:21391724). Found in at least two preparations.
|
Charge (pH 7) | -3.59 |
Kyte-Doolittle Hydrophobicity Value | -0.331 |
Molecular Weight (kDa) | 19247.6 |
Isoelectric Point (pI) | 4.98 |
Individual Mappings | |
Additional evidence for subcellular localization |
Detected in Triton-insoluble fraction of lysozyme-treated B. pseudomallei DD503 cells using trypsin shaving and mass spectrometry (PMID:21391724).
|
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 57 genera
|
Burkholderia Ortholog Group |
BG019180 (327 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BPSS0518
Search term: tssF-6
Search term: type VI secretion system protein TssF-6
|
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433
|
Strategies for Intracellular Survival of Burkholderia pseudomallei.
Allwood EM, Devenish RJ, Prescott M, Adler B, Boyce JD
Front Microbiol 2011;2:170
PubMed ID: 22007185
|
Type VI secretion is a major virulence determinant in Burkholderia mallei.
Schell MA, Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, Chen D, Lipscomb L, Kim HS, Mrázek J, Nierman WC, Deshazer D
Mol Microbiol 2007 Jun;64(6):1466-85
PubMed ID: 17555434
|