Burkholderia pseudomallei K96243, BPSL3197 (rplR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSL3197
Name
rplR
Replicon chromosome 1
Genomic location 3800838 - 3801203 (- strand)

Cross-References

RefSeq YP_109791.1
GI 53720805
Entrez 3094790
GI 53720805
INSDC CAH37208.1
NCBI Locus Tag BPSL3197
RefSeq YP_109791.1,GeneID
UniParc UPI000043B672
UniProtKB Acc Q63Q27
UniProtKB ID RL18_BURPS
UniRef100 UniRef100_A3MRX0
UniRef50 UniRef50_Q9PE60
UniRef90 UniRef90_Q13TI6

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L18
Synonyms
Evidence for Translation
Charge (pH 7) 13.67
Kyte-Doolittle Hydrophobicity Value -0.274
Molecular Weight (kDa) 13061.9
Isoelectric Point (pI) 11.43

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 1
quantitative mass spectrometry evidence
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG000273 (655 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL3197
Search term: rplR

Human Homologs

References

Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268