Burkholderia pseudomallei K96243, BPSL1942 (rplT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSL1942
Name
rplT
Replicon chromosome 1
Genomic location 2313383 - 2313742 (- strand)

Cross-References

RefSeq YP_108541.1
GI 53719555
Entrez 3093771
GI 53719555
INSDC CAH35941.1
NCBI Locus Tag BPSL1942
RefSeq YP_108541.1,GeneID
UniParc UPI000025F4B3
UniProtKB Acc Q63TM5
UniProtKB ID RL20_BURPS
UniRef100 UniRef100_Q1BWV0
UniRef50 UniRef50_A0QHC1
UniRef90 UniRef90_B1YP16

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L20
Synonyms
Evidence for Translation
Charge (pH 7) 24.46
Kyte-Doolittle Hydrophobicity Value -0.355
Molecular Weight (kDa) 13644.1
Isoelectric Point (pI) 12.19

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 1
quantitative mass spectrometry evidence
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG001309 (656 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL1942
Search term: rplT

Human Homologs

Ensembl 97, assembly GRCh38.p12
mitochondrial ribosomal protein L20 [Source:HGNC Symbol;Acc:HGNC:14478]
E-value: 3.6e-13
Percent Identity: 39.2

References

Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268