Burkholderia pseudomallei K96243, BPSL1003

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSL1003
Name
Replicon chromosome 1
Genomic location 1166038 - 1168317 (+ strand)

Cross-References

RefSeq YP_107631.1
GI 53718645
Entrez 3093996
GI 53718645
INSDC CAH34999.1
NCBI Locus Tag BPSL1003
RefSeq YP_107631.1,GeneID
UniParc UPI000043AE35
UniProtKB Acc Q63W85
UniProtKB ID Q63W85_BURPS
UniRef100 UniRef100_A0A097XYX5
UniRef50 UniRef50_E8UEY5
UniRef90 UniRef90_A0A069PVG3

Product

Feature Type CDS
Coding Frame 1
Product Name
ornithine decarboxylase
Synonyms
Evidence for Translation
Charge (pH 7) -26.42
Kyte-Doolittle Hydrophobicity Value -0.187
Molecular Weight (kDa) 85416.2
Isoelectric Point (pI) 5.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Extracellular Class 1
quantitative mass spectrometry evidence
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 242 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002303 (654 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL1003

Human Homologs

References

Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268