Burkholderia pseudomallei K96243, BPSL0880 (sodB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSL0880
Name
sodB
Replicon chromosome 1
Genomic location 1020489 - 1021067 (+ strand)

Cross-References

RefSeq YP_107505.1
GI 53718519
Entrez 3094563
GI 53718519
INSDC CAH34872.1
NCBI Locus Tag BPSL0880
RefSeq YP_107505.1,GeneID
UniParc UPI000043ADBA
UniProtKB Acc Q63WL1
UniProtKB ID Q63WL1_BURPS
UniRef100 UniRef100_Q62HI6
UniRef50 UniRef50_O15905
UniRef90 UniRef90_Q3JVA6

Product

Feature Type CDS
Coding Frame 1
Product Name
superoxide dismutase
Synonyms
Evidence for Translation
Charge (pH 7) -3.33
Kyte-Doolittle Hydrophobicity Value -0.194
Molecular Weight (kDa) 21143.5
Isoelectric Point (pI) 6.14

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Extracellular Class 1
quantitative mass spectrometry evidence
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 528 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002406 (654 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL0880
Search term: sodB

Human Homologs

Ensembl 97, assembly GRCh38.p12
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 1.3e-41
Percent Identity: 45.0
Ensembl 97, assembly GRCh38.p12
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 1.3e-41
Percent Identity: 45.0

References

Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268