Burkholderia pseudomallei K96243, BPSL0880 (sodB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSL0880
Name
sodB
Replicon chromosome 1
Genomic location 1020489 - 1021067 (+ strand)

Cross-References

RefSeq YP_107505.1
GI 53718519
Entrez 3094563
GI 53718519
INSDC CAH34872.1
NCBI Locus Tag BPSL0880
RefSeq YP_107505.1,GeneID
UniParc UPI000043ADBA
UniProtKB Acc Q63WL1
UniProtKB ID Q63WL1_BURPS
UniRef100 UniRef100_Q62HI6
UniRef50 UniRef50_O15905
UniRef90 UniRef90_Q3JVA6

Product

Feature Type CDS
Coding Frame 1
Product Name
superoxide dismutase
Synonyms
Evidence for Translation
Charge (pH 7) -3.33
Kyte-Doolittle Hydrophobicity Value -0.194
Molecular Weight (kDa) 21143.5
Isoelectric Point (pI) 6.14

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Extracellular Class 1
quantitative mass spectrometry evidence
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 528 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002406 (654 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL0880
Search term: sodB

Human Homologs

Ensembl 97, assembly GRCh38.p12
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 1.3e-41
Percent Identity: 45.0

Human Homologs

Ensembl 97, assembly GRCh38.p12
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 1.3e-41
Percent Identity: 45.0

References

Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268