Burkholderia cenocepacia J2315, BCAL0428 (trmE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL0428
NCBI Locus TagQU43_RS38700
Name
trmE
Replicon chromosome 1
Genomic location 472814 - 474208 (+ strand)

Cross-References

RefSeq WP_006489926.1
GI 206558831
Entrez 6930952
GI 206558831
INSDC CAR50740.1
NCBI Locus Tag QU43_RS38700
NCBI Old Locus Tag BCAL0428
RefSeq WP_006489926.1,GeneID
UniParc UPI00017B8F02
UniProtKB Acc B4E7D7
UniProtKB ID B4E7D7_BURCJ
UniRef100 UniRef100_B4E7D7
UniRef50 UniRef50_Q9CLQ1
UniRef90 UniRef90_Q0BAQ4

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA modification GTPase TrmE
Synonyms
Evidence for Translation
Charge (pH 7) -18.72
Kyte-Doolittle Hydrophobicity Value 0.074
Molecular Weight (kDa) 49420.6
Isoelectric Point (pI) 4.86

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 612 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002983 (653 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL0428
Search term: trmE

Human Homologs

Ensembl 97, assembly GRCh38.p12
GTP binding protein 3, mitochondrial [Source:HGNC Symbol;Acc:HGNC:14880]
E-value: 8.6e-55
Percent Identity: 36.2
Ensembl 97, assembly GRCh38.p12
GTP binding protein 3, mitochondrial [Source:HGNC Symbol;Acc:HGNC:14880]
E-value: 8.6e-55
Percent Identity: 36.2

References

No references are associated with this feature.