Burkholderia cenocepacia J2315, BCAS0370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 IPR011991 Winged helix-turn-helix DNA-binding domain 1 84 1.31E-20
Gene3D G3DSA:3.40.190.10 175 265 7.1E-17
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 85 282 8.2E-31
Gene3D G3DSA:3.40.190.10 85 174 2.8E-15
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 3 61 1.8E-20
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 58 31.954
CDD cd08433 PBP2_Nac 90 287 1.52979E-61
SUPERFAMILY SSF53850 84 292 9.15E-32
Gene3D G3DSA:1.10.10.10 IPR011991 Winged helix-turn-helix DNA-binding domain 1 82 1.4E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.