Burkholderia cenocepacia J2315, BCAM2166 (penR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj01501 beta-Lactam resistance 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 36 46 3.0E-9
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 10 69 4.4E-18
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 7 89 1.22E-20
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 8 65 24.816
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 8 94 2.7E-21
SUPERFAMILY SSF53850 96 292 1.47E-36
Gene3D G3DSA:3.40.190.10 105 285 1.5E-56
CDD cd08487 PBP2_BlaA IPR037422 HTH-type transcriptional regulator BlaA, PBP2 domain 97 285 5.62825E-125
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 289 4.0E-39
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 46 57 3.0E-9
Gene3D G3DSA:3.40.190.10 165 259 1.5E-56
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 25 36 3.0E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.