Burkholderia cenocepacia J2315, BCAM0702
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF03466 | LysR substrate binding domain | IPR005119 | LysR, substrate-binding | 93 | 298 | 2.6E-41 |
| SUPERFAMILY | SSF53850 | 94 | 302 | 7.96E-44 | |||
| ProSiteProfiles | PS50931 | LysR-type HTH domain profile. | IPR000847 | Transcription regulator HTH, LysR | 7 | 64 | 26.15 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 317 | - | ||
| Gene3D | G3DSA:1.10.10.10 | IPR036388 | Winged helix-like DNA-binding domain superfamily | 7 | 93 | 3.9E-26 | |
| CDD | cd08422 | PBP2_CrgA_like | 97 | 294 | 3.47865E-64 | ||
| Gene3D | G3DSA:3.40.190.10 | 96 | 294 | 1.7E-56 | |||
| Gene3D | G3DSA:3.40.190.10 | 168 | 269 | 1.7E-56 | |||
| Pfam | PF00126 | Bacterial regulatory helix-turn-helix protein, lysR family | IPR000847 | Transcription regulator HTH, LysR | 9 | 68 | 3.5E-19 |
| SUPERFAMILY | SSF46785 | IPR036390 | Winged helix DNA-binding domain superfamily | 8 | 90 | 7.01E-22 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.