Burkholderia cenocepacia J2315, BCAL3525 (gspF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015628 protein secretion by the type II secretion system
IGC
Inferred from Genomic Context 		ECO:0000177
genomic context evidence
Biological Process GO:0015628 protein secretion by the type II secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015627 type II protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03070 Bacterial secretion system 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR02120 GspF: type II secretion system protein F IPR011850 General secretion pathway protein F 4 404 2.0E-172
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 67 79 8.5E-29
Gene3D G3DSA:1.20.81.30 IPR042094 Type II secretion system F domain superfamily 56 172 1.7E-28
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 369 383 8.5E-29
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 385 404 8.5E-29
Pfam PF00482 Type II secretion system (T2SS), protein F IPR018076 Type II secretion system F domain 72 194 1.0E-29
Pfam PF00482 Type II secretion system (T2SS), protein F IPR018076 Type II secretion system F domain 274 396 3.2E-27
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 166 194 8.5E-29
Gene3D G3DSA:1.20.81.30 IPR042094 Type II secretion system F domain superfamily 258 368 1.4E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.