Burkholderia cenocepacia J2315, BCAL2947

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009244 lipopolysaccharide core region biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0008653 lipopolysaccharide metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00994
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.25.40.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF81901 40 247 2.2E-14
Gene3D G3DSA:1.25.40.10 IPR011990 Tetratricopeptide-like helical domain superfamily 176 357 6.9E-9
SMART SM00028 IPR019734 Tetratricopeptide repeat 70 103 75.0
SMART SM00028 IPR019734 Tetratricopeptide repeat 36 69 32.0
Gene3D G3DSA:1.25.40.10 IPR011990 Tetratricopeptide-like helical domain superfamily 19 172 4.4E-14
Pfam PF18073 Rubredoxin metal binding domain IPR041166 LapB, rubredoxin metal binding domain 354 381 9.3E-9
Pfam PF13432 Tetratricopeptide repeat 49 90 8.8E-5
Pfam PF13432 Tetratricopeptide repeat 185 237 8.6E-6
Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. IPR030865 Lipopolysaccharide assembly protein B 6 386 35.198
ProSiteProfiles PS50293 TPR repeat region circular profile. IPR013026 Tetratricopeptide repeat-containing domain 180 247 9.362
SMART SM00028 IPR019734 Tetratricopeptide repeat 180 213 17.0
ProSiteProfiles PS50293 TPR repeat region circular profile. IPR013026 Tetratricopeptide repeat-containing domain 36 141 11.383
SMART SM00028 IPR019734 Tetratricopeptide repeat 214 247 44.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.