Burkholderia cenocepacia J2315, BCAL0056

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00041
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00041
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00041
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 34 117 1.1E-18
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 21 119 25.235
Gene3D G3DSA:1.10.10.60 15 123 1.2E-22
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 20 63 1.52E-5
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 40 118 7.5E-16
SMART SM00871 IPR010499 Bacterial transcription activator, effector binding 138 293 1.5E-38
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 70 121 4.93E-10
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 71 113 -
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 101 117 3.9E-5
Gene3D G3DSA:3.20.80.10 IPR011256 Regulatory factor, effector binding domain superfamily 138 293 1.1E-41
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 86 101 3.9E-5
Pfam PF06445 GyrI-like small molecule binding domain IPR029442 GyrI-like small molecule binding domain 138 293 6.5E-32
SUPERFAMILY SSF55136 IPR011256 Regulatory factor, effector binding domain superfamily 139 293 2.35E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.