Burkholderia pseudomallei K96243, BPSS1718 (sdhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0050660 | flavin adenine dinucleotide binding |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01816
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006099 | tricarboxylic acid cycle |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01816
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055114 | oxidation-reduction process |
Inferred from Sequence Model
Term mapped from: InterPro:SSF46977
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0022900 | electron transport chain |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01812
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016491 | oxidoreductase activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF46977
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01816
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | superpathway of glyoxylate cycle and fatty acid degradation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps01130 | Biosynthesis of antibiotics | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | methylaspartate cycle | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps00650 | Butanoate metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG (InterPro) | 00190 | Oxidative phosphorylation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| MetaCyc | TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | aerobic respiration III (alternative oxidase pathway) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps01120 | Microbial metabolism in diverse environments | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | bps01110 | Biosynthesis of secondary metabolites | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG (InterPro) | 00720 | Carbon fixation pathways in prokaryotes | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| KEGG | bps01200 | Carbon metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | TCA cycle VII (acetate-producers) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG (InterPro) | 00650 | Butanoate metabolism | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| KEGG | bps00020 | Citrate cycle (TCA cycle) | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG (InterPro) | 00020 | Citrate cycle (TCA cycle) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| MetaCyc | aerobic respiration I (cytochrome c) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps01100 | Metabolic pathways | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | TCA cycle II (plants and fungi) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | aerobic respiration II (cytochrome c) (yeast) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps00190 | Oxidative phosphorylation | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.50.50.60 | IPR036188 | FAD/NAD(P)-binding domain superfamily | 14 | 419 | 1.1E-161 | |
| SUPERFAMILY | SSF51905 | IPR036188 | FAD/NAD(P)-binding domain superfamily | 8 | 436 | 3.18E-77 | |
| TIGRFAM | TIGR01812 | sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit | IPR014006 | Succinate dehydrogenase/fumarate reductase, flavoprotein subunit | 14 | 590 | 1.9E-240 |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 14 | 36 | 3.7E-5 | ||
| Pfam | PF02910 | Fumarate reductase flavoprotein C-term | IPR015939 | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal | 465 | 590 | 1.3E-40 |
| Gene3D | G3DSA:1.20.58.100 | 436 | 550 | 2.2E-34 | |||
| Gene3D | G3DSA:3.90.700.10 | IPR027477 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily | 251 | 354 | 1.1E-161 | |
| TIGRFAM | TIGR01816 | sdhA_forward: succinate dehydrogenase, flavoprotein subunit | IPR011281 | Succinate dehydrogenase, flavoprotein subunit | 11 | 591 | 3.3E-283 |
| SUPERFAMILY | SSF56425 | IPR027477 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily | 241 | 359 | 6.88E-44 | |
| PIRSF | PIRSF000171 | 3 | 582 | 2.7E-44 | |||
| SUPERFAMILY | SSF46977 | IPR037099 | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily | 455 | 591 | 2.35E-46 | |
| Gene3D | G3DSA:4.10.80.40 | 551 | 591 | 1.4E-10 | |||
| Pfam | PF00890 | FAD binding domain | IPR003953 | FAD-dependent oxidoreductase 2, FAD binding domain | 14 | 408 | 4.7E-115 |
| ProSitePatterns | PS00504 | Fumarate reductase / succinate dehydrogenase FAD-binding site. | IPR003952 | Fumarate reductase/succinate dehydrogenase, FAD-binding site | 48 | 57 | - |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 386 | 393 | 3.7E-5 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.