Burkholderia pseudomallei K96243, BPSL2452

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008995 ribonuclease E activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00970
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family IPR004659 Ribonuclease E/G 13 425 3.4E-159
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 39 124 1.92E-18
MobiDBLite mobidb-lite consensus disorder prediction 597 627 -
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 36 117 2.0E-11
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 39 118 12.799
MobiDBLite mobidb-lite consensus disorder prediction 513 530 -
MobiDBLite mobidb-lite consensus disorder prediction 1061 1088 -
MobiDBLite mobidb-lite consensus disorder prediction 513 559 -
MobiDBLite mobidb-lite consensus disorder prediction 584 848 -
Coils Coil 1080 1088 -
Gene3D G3DSA:3.40.1260.20 401 510 1.8E-37
SMART SM00316 IPR022967 RNA-binding domain, S1 37 118 3.0E-10
CDD cd04453 S1_RNase_E 32 124 9.26317E-36
MobiDBLite mobidb-lite consensus disorder prediction 649 732 -
MobiDBLite mobidb-lite consensus disorder prediction 861 1025 -
Hamap MF_00970 Ribonuclease E [rne]. IPR028878 Ribonuclease E 1 1075 40.439
Gene3D G3DSA:2.40.50.140 31 124 7.7E-32
Coils Coil 350 370 -
Pfam PF10150 Ribonuclease E/G family IPR019307 RNA-binding protein AU-1/Ribonuclease E/G 120 391 8.3E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.