Burkholderia pseudomallei K96243, BPSL2169 (dapD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0008666 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009089 | lysine biosynthetic process via diaminopimelate |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016740 | transferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PS00101
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | bps01100 | Metabolic pathways | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | bps01120 | Microbial metabolism in diverse environments | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | bps00300 | Lysine biosynthesis | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG (InterPro) | 00300 | Lysine biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| KEGG | bps01230 | Biosynthesis of amino acids | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd03350 | LbH_THP_succinylT | 104 | 241 | 1.00938E-71 | ||
| Pfam | PF14602 | Hexapeptide repeat of succinyl-transferase | IPR001451 | Hexapeptide repeat | 177 | 211 | 1.0E-13 |
| SUPERFAMILY | SSF51161 | IPR011004 | Trimeric LpxA-like superfamily | 4 | 258 | 1.04E-74 | |
| ProSitePatterns | PS00101 | Hexapeptide-repeat containing-transferases signature. | IPR018357 | Hexapeptide transferase, conserved site | 136 | 164 | - |
| Gene3D | G3DSA:1.10.166.10 | IPR037133 | Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily | 2 | 71 | 1.6E-32 | |
| Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | IPR001451 | Hexapeptide repeat | 135 | 168 | 0.0022 |
| Gene3D | G3DSA:2.160.10.10 | 89 | 259 | 1.3E-55 | |||
| Hamap | MF_00811 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. | IPR005664 | Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family | 2 | 274 | 56.605 |
| Pfam | PF14805 | Tetrahydrodipicolinate N-succinyltransferase N-terminal | IPR023180 | Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 | 4 | 70 | 2.5E-26 |
| TIGRFAM | TIGR00965 | dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | IPR005664 | Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family | 4 | 274 | 7.0E-146 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.