Burkholderia pseudomallei K96243, BPSL2100 (mfd)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003684	damaged DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00580	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003684	damaged DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00580	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00982	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00982	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bps03420	Nucleotide excision repair	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	637	794	7.4E-17
SMART	SM01058		IPR003711	CarD-like/TRCF domain	511	608	7.3E-50
Gene3D	G3DSA:3.40.50.300				574	813	9.7E-232
Gene3D	G3DSA:3.40.50.11140				387	484	1.2E-14
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	47	383	8.85E-94
CDD	cd18810	SF2_C_TRCF			820	970	3.46483E-76
Gene3D	G3DSA:3.40.50.300				510	1022	9.7E-232
CDD	cd17991	DEXHc_TRCF			621	813	5.88096E-117
Gene3D	G3DSA:2.30.30.840		IPR036101	CarD-like/TRCF domain superfamily	515	573	9.7E-232
TIGRFAM	TIGR00580	mfd: transcription-repair coupling factor	IPR004576	Transcription-repair coupling factor	187	1113	0.0
SMART	SM00490		IPR001650	Helicase, C-terminal	858	942	4.4E-17
SUPERFAMILY	SSF143517		IPR037235	TRCF-like, C-terminal domain	1026	1177	3.14E-39
Hamap	MF_00969	Transcription-repair-coupling factor [mfd].	IPR004576	Transcription-repair coupling factor	75	1141	27.439
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	IPR001650	Helicase, C-terminal	820	986	15.986
SMART	SM00487		IPR014001	Helicase superfamily 1/2, ATP-binding domain	632	822	8.7E-32
SMART	SM00982		IPR005118	Transcription-repair-coupling factor, C-terminal domain	1040	1140	1.3E-45
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	388	496	4.25E-23
Gene3D	G3DSA:3.90.1150.50		IPR037235	TRCF-like, C-terminal domain	1036	1180	7.6E-39
Gene3D	G3DSA:3.30.2060.10				168	253	2.4E-113
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	555	815	5.93E-59
Pfam	PF03461	TRCF domain	IPR005118	Transcription-repair-coupling factor, C-terminal domain	1041	1133	2.2E-25
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	815	1022	5.45E-48
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	IPR014001	Helicase superfamily 1/2, ATP-binding domain	650	811	22.958
Gene3D	G3DSA:3.40.50.11180				60	367	2.4E-113
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	838	941	6.5E-17
Pfam	PF17757	UvrB interaction domain	IPR041471	UvrB, interaction domain	169	257	7.3E-18
Pfam	PF02559	CarD-like/TRCF domain	IPR003711	CarD-like/TRCF domain	512	607	1.1E-25
SUPERFAMILY	SSF141259		IPR036101	CarD-like/TRCF domain superfamily	503	580	1.96E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.