Burkholderia pseudomallei K96243, BPSL0780 (sucD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0048037 | cofactor binding |
Inferred from Sequence Model
Term mapped from: InterPro:SM00881
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_01988
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | anaerobic energy metabolism (invertebrates, mitochondrial) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG (InterPro) | 00640 | Propanoate metabolism | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| KEGG | bps01110 | Biosynthesis of secondary metabolites | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | bps01130 | Biosynthesis of antibiotics | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | bps00660 | C5-Branched dibasic acid metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | reductive TCA cycle II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps00640 | Propanoate metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | pyruvate fermentation to acetate V | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps01100 | Metabolic pathways | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | bps01120 | Microbial metabolism in diverse environments | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | TCA cycle II (plants and fungi) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | bps01200 | Carbon metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG (InterPro) | 00720 | Carbon fixation pathways in prokaryotes | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| KEGG | bps00020 | Citrate cycle (TCA cycle) | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | partial TCA cycle (obligate autotrophs) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | methylaspartate cycle | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | pyruvate fermentation to acetate VI | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG (InterPro) | 00020 | Citrate cycle (TCA cycle) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| KEGG (InterPro) | 00660 | C5-Branched dibasic acid metabolism | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00549 | CoA-ligase | IPR005811 | ATP-citrate lyase/succinyl-CoA ligase | 156 | 271 | 1.8E-15 |
| PRINTS | PR01798 | Succinyl-CoA synthase signature | 213 | 226 | 4.2E-33 | ||
| Gene3D | G3DSA:3.40.50.720 | 2 | 128 | 7.0E-43 | |||
| PRINTS | PR01798 | Succinyl-CoA synthase signature | 85 | 102 | 4.2E-33 | ||
| ProSitePatterns | PS00399 | ATP-citrate lyase / succinyl-CoA ligases family active site. | IPR017440 | ATP-citrate lyase/succinyl-CoA ligase, active site | 241 | 254 | - |
| ProSitePatterns | PS01216 | ATP-citrate lyase / succinyl-CoA ligases family signature 1. | IPR033847 | ATP-citrate lyase/succinyl-CoA ligase, conserved site | 157 | 186 | - |
| Gene3D | G3DSA:3.40.50.261 | IPR016102 | Succinyl-CoA synthetase-like | 129 | 293 | 2.1E-67 | |
| PRINTS | PR01798 | Succinyl-CoA synthase signature | 182 | 200 | 4.2E-33 | ||
| Hamap | MF_01988 | Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. | IPR005810 | Succinyl-CoA ligase, alpha subunit | 1 | 293 | 40.472 |
| TIGRFAM | TIGR01019 | sucCoAalpha: succinate-CoA ligase, alpha subunit | IPR005810 | Succinyl-CoA ligase, alpha subunit | 3 | 292 | 6.3E-127 |
| SMART | SM00881 | IPR003781 | CoA-binding | 4 | 103 | 1.1E-29 | |
| PIRSF | PIRSF001553 | IPR005810 | Succinyl-CoA ligase, alpha subunit | 1 | 293 | 1.3E-118 | |
| SUPERFAMILY | SSF52210 | IPR016102 | Succinyl-CoA synthetase-like | 128 | 291 | 9.42E-53 | |
| SUPERFAMILY | SSF51735 | IPR036291 | NAD(P)-binding domain superfamily | 1 | 127 | 3.72E-35 | |
| PRINTS | PR01798 | Succinyl-CoA synthase signature | 245 | 262 | 4.2E-33 | ||
| Pfam | PF02629 | CoA binding domain | IPR003781 | CoA-binding | 6 | 102 | 3.8E-23 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.