Burkholderia pseudomallei K96243, BPSL0210 (dapF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01326
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01326
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008837 diaminopimelate epimerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01326
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps01130 Biosynthesis of antibiotics 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc L-lysine biosynthesis VI InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bps00300 Lysine biosynthesis 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps01230 Biosynthesis of amino acids 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps01120 Microbial metabolism in diverse environments 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc L-lysine biosynthesis II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG (InterPro) 00300 Lysine biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bps01110 Biosynthesis of secondary metabolites 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps01100 Metabolic pathways 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00652 DapF: diaminopimelate epimerase IPR001653 Diaminopimelate epimerase, DapF 4 285 5.6E-87
Gene3D G3DSA:3.10.310.10 5 283 2.9E-96
Hamap MF_00197 Diaminopimelate epimerase [dapF]. IPR001653 Diaminopimelate epimerase, DapF 3 287 37.394
SUPERFAMILY SSF54506 3 287 1.06E-49
ProSitePatterns PS01326 Diaminopimelate epimerase signature. IPR018510 Diaminopimelate epimerase, active site 67 81 -
Pfam PF01678 Diaminopimelate epimerase IPR001653 Diaminopimelate epimerase, DapF 5 126 6.2E-33
Pfam PF01678 Diaminopimelate epimerase IPR001653 Diaminopimelate epimerase, DapF 162 279 4.4E-25
Gene3D G3DSA:3.10.310.10 122 280 2.9E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.