Burkholderia pseudomallei K96243, BPSL0103

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	454	465	9.1E-20
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	414	466	1.3E-14
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	294	302	9.1E-20
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	397	479	1.2E-17
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	243	467	6.0E-31
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	439	454	9.1E-20
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	418	430	9.1E-20
Pfam	PF00140	Sigma-70 factor, region 1.2	IPR009042	RNA polymerase sigma-70 region 1.2	109	141	4.3E-7
CDD	cd06171	Sigma70_r4			409	466	7.53717E-11
MobiDBLite	mobidb-lite	consensus disorder prediction			41	80	-
ProSitePatterns	PS00715	Sigma-70 factors family signature 1.	IPR000943	RNA polymerase sigma-70	270	283	-
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	319	394	8.8E-16
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	247	315	2.0E-21
ProSitePatterns	PS00716	Sigma-70 factors family signature 2.	IPR000943	RNA polymerase sigma-70	439	465	-
Gene3D	G3DSA:1.10.601.10				107	157	5.1E-8
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	108	316	8.77E-46
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	327	395	6.9E-14
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	319	392	5.67E-11
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	377	471	1.31E-21
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	270	283	9.1E-20
Gene3D	G3DSA:1.10.601.10				179	318	3.1E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.